View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_low_22 (Length: 397)

Name: NF7179_low_22
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_low_22
NF7179_low_22
[»] chr7 (3 HSPs)
chr7 (289-389)||(30356256-30356356)
chr7 (42-92)||(33630877-33630927)
chr7 (18-82)||(39887628-39887693)
[»] chr1 (5 HSPs)
chr1 (43-134)||(37799738-37799830)
chr1 (42-91)||(43049436-43049485)
chr1 (66-136)||(48569537-48569607)
chr1 (49-131)||(51877489-51877571)
chr1 (92-132)||(37195635-37195675)
[»] chr8 (4 HSPs)
chr8 (50-91)||(14458223-14458264)
chr8 (60-129)||(6482133-6482202)
chr8 (42-135)||(34269331-34269424)
chr8 (51-131)||(35015754-35015834)
[»] chr4 (5 HSPs)
chr4 (18-133)||(32028216-32028332)
chr4 (42-129)||(48579328-48579415)
chr4 (64-129)||(32028194-32028259)
chr4 (61-129)||(30744219-30744287)
chr4 (92-136)||(32396412-32396456)
[»] chr3 (2 HSPs)
chr3 (43-135)||(11669431-11669523)
chr3 (44-85)||(4030226-4030267)
[»] chr5 (2 HSPs)
chr5 (42-124)||(34038966-34039048)
chr5 (44-82)||(35021049-35021087)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 30356256 - 30356356
Alignment:
Q  289 acaaagtcaagtaaatcaccaccttttgtaaaaaatcagacagcctgtgccatatacttggcaaaccaatttcaactatcaatcaaattaatgttgatgt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30356256 acaaagtcaagtaaatcaccaccttttgtaaaaaatcagacagcctgtgccatatacttggcaaaccaatttcaactatcaatcaaattaatgtcgatgt 30356355  T
Q  389 c 389  Q
    |    
T  30356356 c 30356356  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 33630877 - 33630927
Alignment:
Q  42 tgatttctcaaaagctatattttgtagcttctgcaaaatcatggtgggtca 92  Q
    |||||| |||||| |||||||||||||||| | |||||||| |||||||||    
T  33630877 tgatttttcaaaaactatattttgtagcttatacaaaatcacggtgggtca 33630927  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 39887628 - 39887693
Alignment:
Q  18 atgtcagaatcacggcaacccact-tgatttctcaaaagctatattttgtagcttctgcaaaatca 82  Q
    |||||||||||| ||| ||||||  ||||||  ||||||||| | |||||||||||||||||||||    
T  39887628 atgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatca 39887693  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 37799830 - 37799738
Alignment:
Q  43 gatttctcaaaagctatattttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgatacc-aaacatacacta 134  Q
    ||||| ||||||||| || ||| || ||| || ||||||||| || ||||| ||| || ||||||||||||||||||||| ||||||||||||    
T  37799830 gatttttcaaaagctttactttataacttttgtaaaatcatgatgagtcatcgtgattttgacatactcaccgtgatacctaaacatacacta 37799738  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 43049436 - 43049485
Alignment:
Q  42 tgatttctcaaaagctatattttgtagcttctgcaaaatcatggtgggtc 91  Q
    |||||| | |||||||| | ||||||||||||||||||||||||||||||    
T  43049436 tgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtc 43049485  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 48569537 - 48569607
Alignment:
Q  66 tagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacatacactaaa 136  Q
    ||||||||| ||||||| ||||| ||| |||| |||| ||||| ||||||||||| || ||||||| ||||    
T  48569537 tagcttctgaaaaatcacggtggatcactgtgattctaacatattcaccgtgatatcagacatacattaaa 48569607  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 51877489 - 51877571
Alignment:
Q  49 tcaaaagctatattttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacataca 131  Q
    |||||||||| | |||||||||||| |||||| || |||| |||  ||| ||||| |||||||| ||||||| || |||||||    
T  51877489 tcaaaagctacaatttgtagcttcttcaaaataatagtggatcaccgtgattctggcatactcatcgtgatatcatacataca 51877571  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 37195675 - 37195635
Alignment:
Q  92 attgtggttctgacatactcaccgtgataccaaacatacac 132  Q
    |||||| |||||||||||| ||| |||||||||||||||||    
T  37195675 attgtgattctgacatactaaccatgataccaaacatacac 37195635  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 14458264 - 14458223
Alignment:
Q  50 caaaagctatattttgtagcttctgcaaaatcatggtgggtc 91  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  14458264 caaaagctacattttgtagcttctgcaaaatgatggtgggtc 14458223  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 6482133 - 6482202
Alignment:
Q  60 attttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacata 129  Q
    |||||||||||| |||| ||||||  |||||||| | | |||||||||||  ||||||||| ||||||||    
T  6482133 attttgtagcttatgcataatcatattgggtcatcgcgattctgacatacctaccgtgatatcaaacata 6482202  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 34269331 - 34269424
Alignment:
Q  42 tgatttctcaaaagctatattttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacatacactaa 135  Q
    |||||| ||||||| |||||||| ||||||||||| ||||||  |  |||| |||  ||||||||||| |||  ||||| ||||| ||||||||    
T  34269331 tgatttttcaaaagttatattttatagcttctgcacaatcatattaagtcagtgtaattctgacatacccactctgataacaaacctacactaa 34269424  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 35015834 - 35015754
Alignment:
Q  51 aaaagctatattttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacataca 131  Q
    |||||||| | ||||||| ||||||||||| ||| | |||||||||| |||||||| |  |||||| ||| | ||||||||    
T  35015834 aaaagctacactttgtagtttctgcaaaattatgataggtcattgtgattctgacacatccaccgtaatatcgaacataca 35015754  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 32028216 - 32028332
Alignment:
Q  18 atgtcagaatcacggcaacccact-tgatttctcaaaagctatattttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgt 116  Q
    ||||||||||||||   | ||||| |||||| |||||||||| | ||| |||||| |||||||||| ||||  ||| |||| ||| |||||   ||||||    
T  32028216 atgtcagaatcacgatgatccactatgatttttcaaaagctacactttatagcttatgcaaaatcacggtgaatcactgtgattcagacatctccaccgt 32028315  T
Q  117 gataccaaacatacact 133  Q
    |||||||||||| ||||    
T  32028316 gataccaaacatgcact 32028332  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 48579415 - 48579328
Alignment:
Q  42 tgatttctcaaaagctatattttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacata 129  Q
    |||||| | ||||| || |||||||| ||||||||||||||||||||||  | ||  |||||||||||||| | | |||| |||||||    
T  48579415 tgattttttaaaagatacattttgtaacttctgcaaaatcatggtgggttgtcgtaattctgacatactcatcataatactaaacata 48579328  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 32028259 - 32028194
Alignment:
Q  64 tgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacata 129  Q
    |||||||| || |||||||| |||| |||| ||| ||||||||||   ||||||||||||||||||    
T  32028259 tgtagcttttgaaaaatcatagtggatcatcgtgattctgacatatctaccgtgataccaaacata 32028194  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 30744287 - 30744219
Alignment:
Q  61 ttttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacata 129  Q
    |||||||||||||||  |||||||  | ||||   || |||||||||||||| ||||||||||||||||    
T  30744287 ttttgtagcttctgcttaatcatgacgagtcaccatgattctgacatactcagcgtgataccaaacata 30744219  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 32396456 - 32396412
Alignment:
Q  92 attgtggttctgacatactcaccgtgataccaaacatacactaaa 136  Q
    |||||| || || ||||||||||||||||||||||||| ||||||    
T  32396456 attgtgattatggcatactcaccgtgataccaaacatagactaaa 32396412  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 11669523 - 11669431
Alignment:
Q  43 gatttctcaaaagctatattttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaaacatacactaa 135  Q
    ||||| |||||||||| | || |||||||| ||||||||||||||| |||| |||  |||| || || || ||||||| |||||||| |||||    
T  11669523 gatttttcaaaagctacacttcgtagcttcagcaaaatcatggtggatcatcgtgactctggcacacccatcgtgatatcaaacatatactaa 11669431  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 4030267 - 4030226
Alignment:
Q  44 atttctcaaaagctatattttgtagcttctgcaaaatcatgg 85  Q
    |||| |||||||||| | ||||||||||||||||||||||||    
T  4030267 atttttcaaaagctacactttgtagcttctgcaaaatcatgg 4030226  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 34039048 - 34038966
Alignment:
Q  42 tgatttctcaaaagctatattttgtagcttctgcaaaatcatggtgggtcattgtggttctgacatactcaccgtgataccaa 124  Q
    |||||||  |||||||| | |||||||||||||||||||||||||   | || ||| |||| |||||| |||||| |||||||    
T  34039048 tgatttcctaaaagctacactttgtagcttctgcaaaatcatggttaattatcgtgattctaacatacacaccgtaataccaa 34038966  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 35021049 - 35021087
Alignment:
Q  44 atttctcaaaagctatattttgtagcttctgcaaaatca 82  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  35021049 atttttcaaaagatatattttgtagcttctgcaaaatca 35021087  T

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