View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_28 (Length: 317)
Name: NF7179_low_28
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 6711567 - 6711856
Alignment:
| Q |
1 |
agggaaaaagcaagagcaagagcaagggaaagaactagtaacaagatctcaaacataaggggggtgcaagaagtagaattgaagaaaaaatatgaaaata |
100 |
Q |
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| T |
6711567 |
agggaaaaagcaagagcaagagcaagggaaagaactagtaacaagatctcaaacataaggggggtgcaagaagtagaattgaagaaaaaatatgaaaata |
6711666 |
T |
|
| Q |
101 |
atcttcaagcttttcaacaagatcatcatagtgaaggaccaagaaatgattttaatgttattgaagaatcaattgtgattaagagaaagttgaaaccttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6711667 |
atcttcaagcttttcaacaagatcatcatagtgaaggaccaagaaatgattttaatgttattgaagaatcaattgtgattaagagaaagttgaaaccttc |
6711766 |
T |
|
| Q |
201 |
tatgatggtttcnnnnnnnnnnnnnnnnnnnnctcattaccatcaaagccatgtgatccctaaggaatcatcaacaagtttcaacaacaatgg |
293 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6711767 |
tatgatggtttc---tcatcatcatcatcatcctcattaccatcaaagccatgtgatccctaaggaatcatcaacaagtttcaacaacaatgg |
6711856 |
T |
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