View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_29 (Length: 313)
Name: NF7179_low_29
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 42422256 - 42421987
Alignment:
| Q |
7 |
tttggtgttcatgactttggatttaactgtttcaatgagattgagtcatgtgcactgcaaactatagggatcaaggaaaataaacattagcatatgaata |
106 |
Q |
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| T |
42422256 |
tttggtattcatgactttggatttaactgtttcaatgagattgagtcaagtacactgcaaactatagggatcaaggaaaataaacattagcatatgaata |
42422157 |
T |
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| Q |
107 |
agtaagtatatttggcttgtgagaaaaaataccatgagctcaaattaaagctctttgtgttgagttttatttagttagtgtttcacaaatgttcttgaaa |
206 |
Q |
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| T |
42422156 |
agcaagtatatttggcttgtgaaaaaaaataccatgagctcaaattaaagc----tgtgttgagttttatttagttagtgtttcacaaatgttcttgaaa |
42422061 |
T |
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| Q |
207 |
ggtggaaggtgaacctttcctcttatgaggttcctagtgaaccaaatcataaaaatgatagcaagccaaaaatcatggtaatgctacata |
296 |
Q |
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| T |
42422060 |
----------------ttcctcttatgaggttcctagtgaaccaaatcataaaaatgatagcaagccaaaaatcatggtaatgctacata |
42421987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 42415406 - 42415311
Alignment:
| Q |
14 |
ttcatgactttggatttaactgtttcaatgagattgagtcatgtgcactgcaaactatagggatcaaggaaaataaacattagcatatgaataagta |
110 |
Q |
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| T |
42415406 |
ttcatgattttgggttta-ctgtatcaacgagatagagtcaagtacactgcaaactatagggatgaaggaacatattcattagtatacgaataagta |
42415311 |
T |
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