View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7179_low_3 (Length: 1022)
Name: NF7179_low_3
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_3 |
 | |
|
| [»] scaffold0311 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 178 - 649
Target Start/End: Complemental strand, 19523986 - 19523515
Alignment:
| Q |
178 |
gcaatgatctggtgttaacatggatccttcattccatcgaacccgagatagctcgtagtgtaatattctctgatacggcagcggcagtttggagcgacct |
277 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19523986 |
gcaaggatctggtgttaacatggattcttcattccatcgaacccgacatagctcgtagtgtaatattctctgatacggcagcggcagtttggagcgacct |
19523887 |
T |
|
| Q |
278 |
ccatgatagattttctcaaggagatgagtccaaaatctaccaaattcggcaagaaatttccgaatgtcgtcaaggatccctctcaatctcttattactac |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
19523886 |
ccatgatagattttctcaaggagatgagtccagaatctaccaaattcggcaagaaatttccgaatgtcgtcaaggatccctctcaatctctgattactgc |
19523787 |
T |
|
| Q |
378 |
acaaaactcaagagtctttgggatgaattaggatcttaccaggaacccatcacatgctcctgcgacatgttgaagaaagttgttgtcaaagaggaaaaag |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19523786 |
acaaaactcaagagtctttgggatgaattaggatcttaccaggaacccatcacatgttcctgcgacatgttgaagaaagttgttgtcaaagaggaaaaag |
19523687 |
T |
|
| Q |
478 |
agaaggtaatgcagtttctaatggggcttaacgaatcttattcgcaggtacgtgggtcaattttgatgatgaatccacttccatttggaataatcctttt |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
19523686 |
agaaggtaatgcagtttctaatggggcttaacgaatcttattcgcaggttcgtgggtcaattttgatgatgagtccacttccatttggtttaatcctttt |
19523587 |
T |
|
| Q |
578 |
gaaacatatttgttcataaaatgaaaaagatttattgaactgatgagtaacacaactacctcgaatcaatgc |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19523586 |
gaaacatatttgttcataaaatgaaaaagatttattgaactgatgagtaacacaactacctcgaatcaatgc |
19523515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 768 - 1009
Target Start/End: Complemental strand, 8996626 - 8996387
Alignment:
| Q |
768 |
tattgacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttcttttgaaataatctacctatttaataggtgatatttgttagactt |
867 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |
|
|
| T |
8996626 |
tattgacttcttcaatgtcatcacgtttctcttttgtaaaatttatgtaaacttcttttgaaataatctacctatttaaaaggtgatatttattagaatt |
8996527 |
T |
|
| Q |
868 |
aatannnnnnncaatgtgctttaaatgtgcaaaatgaatttgacttggtattagcatatgtgttattcagttttcctgaaaagagtaactgaaacgtgct |
967 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8996526 |
aatattttt--caatgtgctttaaatgtgcaaaatgaatttgacttggtaatagcatatgtgttattcagttttcctgaaaagagtaactgaaacgtgct |
8996429 |
T |
|
| Q |
968 |
ccatcctacaaatattttcatggatttttatcattaataatt |
1009 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8996428 |
ccatcctacaaatattttcatggatttttatcattaataatt |
8996387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 768 - 1009
Target Start/End: Complemental strand, 8989511 - 8989272
Alignment:
| Q |
768 |
tattgacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttcttttgaaataatctacctatttaataggtgatatttgttagactt |
867 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
8989511 |
tattgacttcttcaatgtcatcacttttctcttttgtaaaatttatgtaaacttcttttgaaataatctacctatttaacaggtgatatttgttagaatt |
8989412 |
T |
|
| Q |
868 |
aatannnnnnncaatgtgctttaaatgtgcaaaatgaatttgacttggtattagcatatgtgttattcagttttcctgaaaagagtaactgaaacgtgct |
967 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8989411 |
aatattttt--caatgtgctttaaatgtgcaaaatgaatttgacttggttgtagcatatgtgttattcagttttcctgaaaagagtaactgaaacgtgct |
8989314 |
T |
|
| Q |
968 |
ccatcctacaaatattttcatggatttttatcattaataatt |
1009 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8989313 |
ccatcctacaaatattttcatggatttttatcattaataatt |
8989272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 19524111 - 19523985
Alignment:
| Q |
19 |
ggatatcaatggttaaccaacctctgaatggacgtaactaagacgaatggagtcgcttaatgctcctcagtcttagtgccaaaaacaaactcggtctgat |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
19524111 |
ggatatcattggttaaccaacctctgaatggacgtaactacggctaatggagtcgcttaatgctcctcagtcttagcgccaaaaacaaactcggtctgat |
19524012 |
T |
|
| Q |
119 |
ccatggaacagtgaaagcgtggtcggc |
145 |
Q |
| |
|
| |||||||||||||||||| |||||| |
|
|
| T |
19524011 |
cgatggaacagtgaaagcgtcgtcggc |
19523985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 770 - 914
Target Start/End: Original strand, 6798693 - 6798838
Alignment:
| Q |
770 |
ttgacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttcttttgaaataatctacctatttaataggtgatatttgttagacttaa |
869 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
6798693 |
ttgacttcttcgatgtcatcacgtttctcttttgcaaaatttgtgtaaacttcttttgaaataatctacctatttaataggtgatgtttgttaaacttaa |
6798792 |
T |
|
| Q |
870 |
tannnnnnncaatgtgc-tttaaatgtgcaaaatgaatttgacttg |
914 |
Q |
| |
|
| |||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
6798793 |
ttggtttttcaatgtgcttttaaatgtgctaaatgaaattgacttg |
6798838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 772 - 870
Target Start/End: Original strand, 6806347 - 6806445
Alignment:
| Q |
772 |
gacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttcttttgaaataatctacctatttaataggtgatatttgttagacttaat |
870 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
6806347 |
gacttcttcaatgtcatcacgtttctcttttgcaaaatttgtgtaaacttcttttgaaataatctacctatttaataggtgatgtttgttaaacttaat |
6806445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 817 - 918
Target Start/End: Original strand, 22749795 - 22749895
Alignment:
| Q |
817 |
aacttcttttgaaataatctacctatttaataggtgatatttgttagacttaatannnnnnncaatgtgctttaaatgtgcaaaatgaatttgacttggt |
916 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| | || |||| | | ||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
22749795 |
aactttttttgaaataatctacctatttaataggtgatattagctatacttta-attatgttcaatgtgttttaagtgtgctaaatgaatttgacttggt |
22749893 |
T |
|
| Q |
917 |
at |
918 |
Q |
| |
|
|| |
|
|
| T |
22749894 |
at |
22749895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Complemental strand, 41286683 - 41286146
Alignment:
| Q |
19 |
ggatatcaatggttaaccaacctctgaatggacgtaactaagacgaatggagtcgcttaatgctcctcagtcttagtgccaaaaacaaactcggtctgat |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| | |||||||||||| | |||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
41286683 |
ggatatcactggttaaccaacctctgaatggaggtaactacggcgaatggagtcgatcaatgctcctcagcctcagcgccaaaaacaaactcggtctgat |
41286584 |
T |
|
| Q |
119 |
ccatggaacagtgaaagcgtggtcggctgatgacccaaaactcccattatgtaaacgttgcaatgatctggtgttaacatggatccttcattccatcgaa |
218 |
Q |
| |
|
| ||||||| ||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41286583 |
cgatggaacggtgaaagcgccgtcggctgacgacccaaaactcccattgtggaaacgttgcaatgatctggtgctaacatggatccttcattccatcgaa |
41286484 |
T |
|
| Q |
219 |
cccgagatagctcgtagtgtaatattctctgatacggcagcggcagtttggagcgacctccatgatagattttctcaaggagatgagtccaaaatctacc |
318 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
41286483 |
cccgacatagctcgtagtgtaatcttctctgacacggcagcagcagtttggagcgacctccatgatagattctctcaaggagatgagtccagaatctacc |
41286384 |
T |
|
| Q |
319 |
aaattcggcaagaaatttccgaatgtcgtcaaggatccctctcaatctcttattactacacaaaactcaagagtctttgggatgaattaggatcttacca |
418 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41286383 |
aaattcggcaagaaatttctgaatgtcgtcaaggatccctcttaatctctgattactacacaaagctcaagagtctttgggatgaattaggatcttacca |
41286284 |
T |
|
| Q |
419 |
ggaacccatcacatgctcctgcgacatgttgaagaaagttgttgtcaaagaggaaaaagagaaggtaatgcagtttctaatggggcttaacgaatcttat |
518 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41286283 |
ggaacccatcacatgttcctgcgacatgttgaagaaagttgctgtcagagaggaaaaagagaaggtaatgcagtttctaatggggcttaacgaatcttat |
41286184 |
T |
|
| Q |
519 |
tcgcaggtacgtgggtcaattttgatgatgaatccact |
556 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
41286183 |
tcgcaggtacgtgggtcgatcttgatgatgaacccact |
41286146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 771 - 870
Target Start/End: Original strand, 32355002 - 32355100
Alignment:
| Q |
771 |
tgacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttcttttgaaataatctacctatttaataggtgatatttgttagacttaat |
870 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
32355002 |
tgacttcttcaat-tcatcacgtttctgttttgccaaatttgtgtaaaattcttttgaaataatcttcctatttaataggtgatatttgttaaacttaat |
32355100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 770 - 862
Target Start/End: Original strand, 47322834 - 47322926
Alignment:
| Q |
770 |
ttgacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttcttttgaaataatctacctatttaataggtgatatttgtta |
862 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47322834 |
ttgacttcttcaatgttaacacgtttctcttttgcaaaatttgtgtaaacttcttttgaaataatctacctatttaataggcgatatttgtta |
47322926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 770 - 854
Target Start/End: Original strand, 19759302 - 19759385
Alignment:
| Q |
770 |
ttgacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttcttttgaaataatctacctatttaataggtgat |
854 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||| |||||| |||||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
19759302 |
ttgacttcttcaat-tcatcacgtttctgttttgccaaatttgtgtaaaattcttttgaaataatcttcctctttaataggtgat |
19759385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 770 - 826
Target Start/End: Original strand, 47325644 - 47325700
Alignment:
| Q |
770 |
ttgacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttctttt |
826 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47325644 |
ttgacttcttcaatgtcatcacgtttctcttttgcaaaattcgtgtaaacttctttt |
47325700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 770 - 838
Target Start/End: Complemental strand, 45483211 - 45483143
Alignment:
| Q |
770 |
ttgacttcttcaatgttatcacgtttctcttttgcaaaatttatgtaaacttcttttgaaataatctac |
838 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45483211 |
ttgacttcttcaatgtcatcacgtttctcttttgcaaaatttgtgtaaacttcttttgaaataatctac |
45483143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 822 - 868
Target Start/End: Original strand, 19180 - 19226
Alignment:
| Q |
822 |
cttttgaaataatctacctatttaataggtgatatttgttagactta |
868 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19180 |
cttttgaattaatctacctatttaattggtgatatttgttagactta |
19226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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