View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_31 (Length: 308)
Name: NF7179_low_31
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 3610048 - 3610333
Alignment:
| Q |
1 |
cctctaattcttcttataaaaaggaccaaaccttgcttcctctcttcaaaatcatctcttccttaagtcttattctttaaacaaaacctgcaaaatttta |
100 |
Q |
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| T |
3610048 |
cctctaattcttcttataaaaaggaccaaaccttgcttcctctcttcaaaatcatctcttccttaagccttattctttaaacaaaaccttcaacattttg |
3610147 |
T |
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| Q |
101 |
aataccctcctcttattctttatctaaaccactacaagttttgttaacttccacaaccatcaaaatcctaagagctcatttgttgtttcagcataacaaa |
200 |
Q |
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| T |
3610148 |
aataccc------ttttgcatatctaaaccactacaaattttgttaacttccacaaccttcaaaatcttaagggctcatttggtg-ttcagcataacaaa |
3610240 |
T |
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| Q |
201 |
aacaagaaa--aattttgagattgttttgaaccttggtttgaagaaatggcatcaatgtcagcatctggttcatggagtgctaaggacaataa |
291 |
Q |
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||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3610241 |
aacaagaaatttgtttggactttgttttgaaccttggtttgaagaaatggcatcaatgtcagcatctggttcatggagtgctaaggacaataa |
3610333 |
T |
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