View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7179_low_33 (Length: 290)
Name: NF7179_low_33
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 40276435 - 40276719
Alignment:
| Q |
1 |
tggatattattagaactattagaatgaggaagccgcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40276435 |
tggatattattagaactattagaatgaggaagccgcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcat |
40276534 |
T |
|
| Q |
101 |
tggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40276535 |
tggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctct |
40276634 |
T |
|
| Q |
201 |
aaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctgctact |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40276635 |
aaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctgatact |
40276719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 275
Target Start/End: Original strand, 39625193 - 39625429
Alignment:
| Q |
39 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
138 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
39625193 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39625292 |
T |
|
| Q |
139 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
238 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||| | ||| || |||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||| |
|
|
| T |
39625293 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39625392 |
T |
|
| Q |
239 |
agtgtttgtcaatatcttcaacgcgtgattcacctgt |
275 |
Q |
| |
|
|||||||||| ||||| || || |||||||||||||| |
|
|
| T |
39625393 |
agtgtttgtcgatatcctcgacacgtgattcacctgt |
39625429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 275
Target Start/End: Original strand, 39634743 - 39634979
Alignment:
| Q |
39 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
138 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
39634743 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39634842 |
T |
|
| Q |
139 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
238 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||| | ||| || |||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||| |
|
|
| T |
39634843 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39634942 |
T |
|
| Q |
239 |
agtgtttgtcaatatcttcaacgcgtgattcacctgt |
275 |
Q |
| |
|
|||||||||| ||||| || || |||||||||||||| |
|
|
| T |
39634943 |
agtgtttgtcgatatcctcgacacgtgattcacctgt |
39634979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University