View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_34 (Length: 272)
Name: NF7179_low_34
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 1824273 - 1824520
Alignment:
| Q |
1 |
aaaacgcggaattcgtacggtataagctctagtatatgtactataggttgaaaagtacgtttagtgtaagttctgttacaaagttctgctgaaaatgaag |
100 |
Q |
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| T |
1824273 |
aaaacgcggaattcgtacggtataagctctagtatatgtactataggttgaaaagtacgtttagtgtaagttctgttacaaagttctgctgaaaatgaag |
1824372 |
T |
|
| Q |
101 |
tgtctattaatttattaaacgcgattttgttcaagcttagcatgatacagctgttctcaaactctatagagaaccaccattgattttcttattacgtgta |
200 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1824373 |
tgtctattaatttattaaacacgattttgttgaagcttagcatgatacagctgttctcaaactctatagagaaccaccattgattttcttattacgtgta |
1824472 |
T |
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| Q |
201 |
tgggcacccaattatatggaaaattagtatatctaattaactatgatcattaa |
253 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1824473 |
tgggcacc-aattatatggaaaattagtatatctaa----ctatgatcattaa |
1824520 |
T |
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