View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_low_36 (Length: 262)

Name: NF7179_low_36
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_low_36
NF7179_low_36
[»] chr4 (1 HSPs)
chr4 (19-250)||(5988807-5989038)
[»] chr3 (26 HSPs)
chr3 (108-249)||(2919898-2920039)
chr3 (128-247)||(5966215-5966334)
chr3 (128-247)||(11497205-11497324)
chr3 (154-250)||(7491950-7492046)
chr3 (108-222)||(11490763-11490877)
chr3 (137-237)||(4091888-4091988)
chr3 (137-242)||(5052299-5052404)
chr3 (137-237)||(4114629-4114729)
chr3 (137-237)||(4130348-4130448)
chr3 (137-237)||(4060151-4060251)
chr3 (137-237)||(4079760-4079860)
chr3 (151-182)||(9839506-9839537)
chr3 (151-182)||(9850384-9850415)
chr3 (151-182)||(10363191-10363222)
chr3 (151-182)||(10433437-10433468)
chr3 (151-182)||(10581255-10581286)
chr3 (154-182)||(10032651-10032679)
chr3 (154-182)||(10089438-10089466)
chr3 (154-182)||(10127576-10127604)
chr3 (154-182)||(10196321-10196349)
chr3 (154-182)||(10261346-10261374)
chr3 (154-182)||(10528006-10528034)
chr3 (154-182)||(10664174-10664202)
chr3 (154-182)||(10672330-10672358)
chr3 (154-182)||(11769882-11769910)
chr3 (154-182)||(13854073-13854101)
[»] chr8 (1 HSPs)
chr8 (128-244)||(18388420-18388536)
[»] chr5 (1 HSPs)
chr5 (138-249)||(16447212-16447323)
[»] scaffold0603 (1 HSPs)
scaffold0603 (136-249)||(4419-4532)
[»] chr1 (2 HSPs)
chr1 (137-237)||(13933775-13933875)
chr1 (108-246)||(17312124-17312262)
[»] scaffold0267 (1 HSPs)
scaffold0267 (128-230)||(19087-19189)
[»] scaffold0083 (2 HSPs)
scaffold0083 (151-182)||(56995-57026)
scaffold0083 (151-182)||(57804-57835)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 5988807 - 5989038
Alignment:
Q  19 cttctccgtaccgaattgtcctcaaatgactggtattatatgctagaaagtaacatttgggggttgataggtcatgggatgcaagctaatctacgattga 118  Q
    |||||||||||| | |||||| ||||||||||| ||||| || ||||| ||||||||| |  |||||||||| ||||| |||| || ||||||| |||||    
T  5988807 cttctccgtaccaatttgtccccaaatgactggaattatgtgttagaatgtaacattttgaagttgataggttatgggttgcatgccaatctacaattga 5988906  T
Q  119 gctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  5988907 gctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgagggtagttcagttgtg 5989006  T
Q  219 gattgcagaaggtttagtagaatcgtccacag 250  Q
    ||||||||||||||||||||||||||||||||    
T  5989007 gattgcagaaggtttagtagaatcgtccacag 5989038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 2919898 - 2920039
Alignment:
Q  108 tctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggta 207  Q
    ||||| |||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||    
T  2919898 tctacaattgagctacttctatctttcgactcctttaaaacgctgctttgcatattgttcaatttttccaaaggagtccatcttagaaaaaaagagggta 2919997  T
Q  208 gtgcagttgtggattgcagaaggtttagtagaatcgtccaca 249  Q
    || |||||||||||||||||||| ||||||||||| ||||||    
T  2919998 gttcagttgtggattgcagaaggcttagtagaatcttccaca 2920039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 5966215 - 5966334
Alignment:
Q  128 atctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga 227  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||| ||| ||||| || |||||||||   ||||||| |||||||||||||||||    
T  5966215 atctttcgactcttttaaaaaactgctttgcatattgttcaatttttccgaagaagtccatcatagaaaaaaatttggtagttcagttgtggattgcaga 5966314  T
Q  228 aggtttagtagaatcgtcca 247  Q
    ||| ||||||||||||||||    
T  5966315 aggcttagtagaatcgtcca 5966334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 11497324 - 11497205
Alignment:
Q  128 atctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga 227  Q
    |||||||  ||||||||||| | |||||||||||||| ||||||||||| ||| | ||| ||||||||||||   || |||| ||| |||||||||||||    
T  11497324 atctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagaaaaaaatgtgatagttcagctgtggattgcaga 11497225  T
Q  228 aggtttagtagaatcgtcca 247  Q
    ||| ||||||||||||||||    
T  11497224 aggcttagtagaatcgtcca 11497205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 7492046 - 7491950
Alignment:
Q  154 tttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagtagaatcgtccacag 250  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||  ||| |||| |||||||||||||||||||| || |||||||||| |||||    
T  7492046 tttgaatattgttctatttttccaaagaagtccatcttagaaaaaaatatgttagttcagttgtggattgcagaaggctttgtagaatcgtacacag 7491950  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 11490877 - 11490763
Alignment:
Q  108 tctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggta 207  Q
    ||||| ||||||||||  | |||| ||| |||||||||||   ||||||| |||||||||||||||||| ||| ||||| ||||||||||||   |||||    
T  11490877 tctacaattgagctaccattatctatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaagtccatcttagaaaaaaatgtggta 11490778  T
Q  208 gtgcagttgtggatt 222  Q
    || ||||||||||||    
T  11490777 gttcagttgtggatt 11490763  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 4091988 - 4091888
Alignment:
Q  137 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 236  Q
    ||||||||||||| || ||||| ||||||||||||||| | ||| | ||  ||||| | ||||  |||||||| ||||||||||||||||||||||||||    
T  4091988 ctcctttaaaaggatgttttgcttattgttcaattttttcgaagaattcaatcttaaagaaaaaaatggtagttcagttgtggattgcagaaggtttagt 4091889  T
Q  237 a 237  Q
    |    
T  4091888 a 4091888  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 5052299 - 5052404
Alignment:
Q  137 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 236  Q
    |||||||||||   ||||||| |||||||||||||||||| ||| | | | ||||||||||||   |||| || |||||||||||||||||||| || ||    
T  5052299 ctcctttaaaacagtgctttgaatattgttcaatttttccgaagaaatacatcttagaaaaaaatgtggtggttcagttgtggattgcagaagggttggt 5052398  T
Q  237 agaatc 242  Q
    ||||||    
T  5052399 agaatc 5052404  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 4114729 - 4114629
Alignment:
Q  137 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 236  Q
    ||||||||||| | |||||||| || |||||||||||||| ||| | ||  | ||||| ||||  ||||| || ||||||||||||||||||||||||||    
T  4114729 ctcctttaaaaagatgctttgcttactgttcaatttttccgaagaactcaattttagagaaaaatatggtcgttcagttgtggattgcagaaggtttagt 4114630  T
Q  237 a 237  Q
    |    
T  4114629 a 4114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 4130348 - 4130448
Alignment:
Q  137 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 236  Q
    ||||| ||||||| |||||||| ||||||||||||||||| ||| | ||  || |||| ||||  |||||||| || ||||||||||||||||| |||||    
T  4130348 ctcctataaaaggatgctttgcttattgttcaatttttccgaagaactcaatcatagagaaaaaaatggtagttcaattgtggattgcagaaggcttagt 4130447  T
Q  237 a 237  Q
    |    
T  4130448 a 4130448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 4060251 - 4060151
Alignment:
Q  137 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 236  Q
    ||||||||||||| || ||||| || |||||||||||| | ||| | ||  ||||||| ||||  | |||| | ||||||||||||||||||||||||||    
T  4060251 ctcctttaaaaggatgttttgcttactgttcaattttttcgaagaattcaatcttagagaaaaaaacggtaattcagttgtggattgcagaaggtttagt 4060152  T
Q  237 a 237  Q
    |    
T  4060151 a 4060151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 4079860 - 4079760
Alignment:
Q  137 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 236  Q
    ||||||||||||| || ||||| || |||||||||||| | ||| | ||  ||||||| ||||  | |||| | ||||||||||||||||||||||||||    
T  4079860 ctcctttaaaaggatgttttgcttactgttcaattttttcgaagaattcaatcttagagaaaaaaacggtaattcagttgtggattgcagaaggtttagt 4079761  T
Q  237 a 237  Q
    |    
T  4079760 a 4079760  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 9839506 - 9839537
Alignment:
Q  151 tgctttgcatattgttcaatttttccaaagga 182  Q
    ||||||||||||||||||||||||||||||||    
T  9839506 tgctttgcatattgttcaatttttccaaagga 9839537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 9850384 - 9850415
Alignment:
Q  151 tgctttgcatattgttcaatttttccaaagga 182  Q
    ||||||||||||||||||||||||||||||||    
T  9850384 tgctttgcatattgttcaatttttccaaagga 9850415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 10363222 - 10363191
Alignment:
Q  151 tgctttgcatattgttcaatttttccaaagga 182  Q
    ||||||||||||||||||||||||||||||||    
T  10363222 tgctttgcatattgttcaatttttccaaagga 10363191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 10433468 - 10433437
Alignment:
Q  151 tgctttgcatattgttcaatttttccaaagga 182  Q
    ||||||||||||||||||||||||||||||||    
T  10433468 tgctttgcatattgttcaatttttccaaagga 10433437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 10581255 - 10581286
Alignment:
Q  151 tgctttgcatattgttcaatttttccaaagga 182  Q
    ||||||||||||||||||||||||||||||||    
T  10581255 tgctttgcatattgttcaatttttccaaagga 10581286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10032651 - 10032679
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  10032651 tttgcatattgttcaatttttccaaagga 10032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10089438 - 10089466
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  10089438 tttgcatattgttcaatttttccaaagga 10089466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10127576 - 10127604
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  10127576 tttgcatattgttcaatttttccaaagga 10127604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10196321 - 10196349
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  10196321 tttgcatattgttcaatttttccaaagga 10196349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10261346 - 10261374
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  10261346 tttgcatattgttcaatttttccaaagga 10261374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10528006 - 10528034
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  10528006 tttgcatattgttcaatttttccaaagga 10528034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10664174 - 10664202
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  10664174 tttgcatattgttcaatttttccaaagga 10664202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 10672330 - 10672358
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  10672330 tttgcatattgttcaatttttccaaagga 10672358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 11769882 - 11769910
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  11769882 tttgcatattgttcaatttttccaaagga 11769910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 13854101 - 13854073
Alignment:
Q  154 tttgcatattgttcaatttttccaaagga 182  Q
    |||||||||||||||||||||||||||||    
T  13854101 tttgcatattgttcaatttttccaaagga 13854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 18388420 - 18388536
Alignment:
Q  128 atctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga 227  Q
    |||| ||||||||||||||| | |||||||||| |||||||||||| |||||| ||||| ||||| |||||||  ||||||| |||||||||||||||||    
T  18388420 atctatcgactcctttaaaacggtgctttgcattttgttcaattttcccaaagaagtccatcttaaaaaaaattgtggtagttcagttgtggattgcaga 18388519  T
Q  228 aggtttagtagaatcgt 244  Q
    ||| ||| |||||||||    
T  18388520 aggcttattagaatcgt 18388536  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 16447212 - 16447323
Alignment:
Q  138 tcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagta 237  Q
    |||| ||||||  ||||||||||||||||||| |||||||||| | ||| |||||||||| | || | || | |||||||||||||||||||||||||||    
T  16447212 tcctctaaaagaatgctttgcatattgttcaaattttccaaagaattccatcttagaaaagaagacgataattcagttgtggattgcagaaggtttagta 16447311  T
Q  238 gaatcgtccaca 249  Q
    ||||||||||||    
T  16447312 gaatcgtccaca 16447323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 4532 - 4419
Alignment:
Q  136 actcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttag 235  Q
    |||||||||||| | |||||||  ||||||||||||||||||||| ||||| || |||||||||   ||  ||| |||||||||||||||||||| ||||    
T  4532 actcctttaaaacgatgctttgagtattgttcaatttttccaaagaagtccatcatagaaaaaaatttgacagttcagttgtggattgcagaaggcttag 4433  T
Q  236 tagaatcgtccaca 249  Q
    || |||||||||||    
T  4432 taaaatcgtccaca 4419  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 13933775 - 13933875
Alignment:
Q  137 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 236  Q
    ||||||||||||| |||||||| || |||||||||||||| ||| | ||  ||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  13933775 ctcctttaaaaggatgctttgcttactgttcaatttttccgaagaactcaatcttagagaaaaatatggtagttcagttgtggattgcagaaggtttagt 13933874  T
Q  237 a 237  Q
    |    
T  13933875 a 13933875  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 17312124 - 17312262
Alignment:
Q  108 tctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggta 207  Q
    ||||| ||||||||||| | |||||  |  |||||||||| | ||||||| |||||||||||||||||| ||| | ||| ||||||||||||    ||||    
T  17312124 tctacaattgagctactgttatcttctggatcctttaaaacggtgctttgaatattgttcaatttttccgaagaaatccatcttagaaaaaaatgcggta 17312223  T
Q  208 gtgcagttgtggattgcagaaggtttagtagaatcgtcc 246  Q
    || || ||||||||||||||||| || ||||||||||||    
T  17312224 gttcaattgtggattgcagaagggttggtagaatcgtcc 17312262  T

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Target: scaffold0267 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 19087 - 19189
Alignment:
Q  128 atctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga 227  Q
    ||||| || ||||||||||| | || ||||| || |||||||||||||||||| | ||| ||||  ||||||  |||||||| ||||| ||||| |||||    
T  19087 atcttccggctcctttaaaaagatgttttgcttactgttcaatttttccaaagaactccatcttgcaaaaaaatatggtagttcagttatggatggcaga 19186  T
Q  228 agg 230  Q
    |||    
T  19187 agg 19189  T

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Target: scaffold0083 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 57026 - 56995
Alignment:
Q  151 tgctttgcatattgttcaatttttccaaagga 182  Q
    ||||||||||||||||||||||||||||||||    
T  57026 tgctttgcatattgttcaatttttccaaagga 56995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 57835 - 57804
Alignment:
Q  151 tgctttgcatattgttcaatttttccaaagga 182  Q
    ||||||||||||||||||||||||||||||||    
T  57835 tgctttgcatattgttcaatttttccaaagga 57804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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