View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_low_39 (Length: 254)

Name: NF7179_low_39
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_low_39
NF7179_low_39
[»] chr6 (3 HSPs)
chr6 (16-84)||(3515996-3516064)
chr6 (99-160)||(3516118-3516179)
chr6 (186-235)||(3516203-3516252)
[»] chr2 (7 HSPs)
chr2 (16-88)||(44928515-44928587)
chr2 (99-160)||(29221139-29221200)
chr2 (99-160)||(29334438-29334499)
chr2 (99-160)||(44928636-44928697)
chr2 (186-236)||(29221226-29221276)
chr2 (186-236)||(29334525-29334575)
chr2 (186-236)||(44928723-44928773)
[»] chr3 (3 HSPs)
chr3 (16-94)||(30425019-30425098)
chr3 (24-151)||(7271775-7271905)
chr3 (99-160)||(30424915-30424976)
[»] chr5 (7 HSPs)
chr5 (98-160)||(20674845-20674907)
chr5 (99-160)||(15023263-15023324)
chr5 (99-160)||(6092932-6092993)
chr5 (186-236)||(15023350-15023400)
chr5 (16-84)||(20674722-20674791)
chr5 (186-236)||(6092857-6092907)
chr5 (186-236)||(20674932-20674982)
[»] chr8 (2 HSPs)
chr8 (99-160)||(34776679-34776740)
chr8 (186-236)||(34776766-34776816)
[»] chr4 (4 HSPs)
chr4 (99-160)||(55760399-55760460)
chr4 (99-159)||(31487376-31487436)
chr4 (186-236)||(31487298-31487348)
chr4 (186-236)||(55760323-55760373)
[»] chr1 (5 HSPs)
chr1 (99-160)||(14589766-14589827)
chr1 (99-160)||(6463490-6463551)
chr1 (186-235)||(6463415-6463464)
chr1 (186-236)||(14589853-14589903)
chr1 (25-85)||(11109981-11110041)
[»] scaffold0608 (1 HSPs)
scaffold0608 (25-85)||(5418-5478)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 3515996 - 3516064
Alignment:
Q  16 acatcagctaaggagtcacaagttcatgactatattttgtttgaaatttatcgtattatgcactttttt 84  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3515996 acatgagctaaggagtcacaagttcatgactatattttgtttgaaatttatcgtattatgcactttttt 3516064  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 3516118 - 3516179
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||    
T  3516118 ttttgatttggcaaaatactattatttgtaaaattttatgtattaatttaaattcagttatg 3516179  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 3516203 - 3516252
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccata 235  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3516203 gtattaaagtgcgggtaatgggcgcgagtacgggcatttagatgcccata 3516252  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 44928515 - 44928587
Alignment:
Q  16 acatcagctaaggagtcacaagttcatgactatattttgtttgaaatttatcgtattatgcacttttttcata 88  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44928515 acatgagctaaggagtcataagttcatgactatattttgtttgaaatttatcgtactatgcacttttttcata 44928587  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 29221139 - 29221200
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  29221139 ttttgatttggcaaaatactattatttgcaaaattttatgtattgatttaaattcagttatg 29221200  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 29334438 - 29334499
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  29334438 ttttgatttggcaaaatactattatttgcaaaattttatgtattgatttaaattcagttatg 29334499  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 44928636 - 44928697
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  44928636 ttttgatttggcaaaatactattatttgcaaaattttatgtattaatttaaattcagttatg 44928697  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 29221226 - 29221276
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29221226 gtattaaagtgcgggtaatgggcgcgagtacgggcatttagatgcccatag 29221276  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 29334525 - 29334575
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29334525 gtattaaagtgcgggtaatgggcgcgagtacgggcatttagatgcccatag 29334575  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 44928723 - 44928773
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  44928723 gtattaaagtgcaggtaatgggcgcgagtacgggtatttagatgcccatag 44928773  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 30425098 - 30425019
Alignment:
Q  16 acatcagctaaggagtcacaagttcatgactatattttgtttgaaatttatcgtattatgcactt-ttttcatatagact 94  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||| |||||    
T  30425098 acatgagctaaggagtcacaagttcatgactatattttgtttgaaatttattctattatgcacttattttcatacagact 30425019  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 7271775 - 7271905
Alignment:
Q  24 taaggagtcacaagttcatgactatattttgtttgaaatttatcgtattatgcacttttttcatatagact----atgtttttgatttggcaaaaaacta 119  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||| ||| | |||    ||| |||| ||||||||||| ||||    
T  7271775 taaggagtcacaagtttatgattatattttgtttgaaatttatcgtagtatgca-ttttttgatacaaactttgaatgctttttatttggcaaaatacta 7271873  T
Q  120 ttatttgcaaaattttatgtactgatttaaat 151  Q
    |||||||||| ||||| |||  ||||||||||    
T  7271874 ttatttgcaatattttgtgtgttgatttaaat 7271905  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 30424976 - 30424915
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  30424976 ttttgatttggcaaaatactattatttgcaaaattttaagtattgatttaaattcagttatg 30424915  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 20674845 - 20674907
Alignment:
Q  98 tttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20674845 ttttcgatttggcaaaaaactattatttgcaaaattttatgtattgatttaaattcagttatg 20674907  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 15023263 - 15023324
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  15023263 ttttgatttggcaaaatactattatttgcaaaattttatgtattgatttaaattcagttatg 15023324  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 6092993 - 6092932
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  6092993 ttttgatttgacaaaatactattatttgcaaaattttatgtattgatttaaattcagttatg 6092932  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 15023350 - 15023400
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15023350 gtattaaagtgcgggtaatgggcgcgagtacgggcatttagatgcccatag 15023400  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 20674722 - 20674791
Alignment:
Q  16 acatcagctaaggagtcacaagttcatgactatattttg-tttgaaatttatcgtattatgcactttttt 84  Q
    |||| ||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||||||    
T  20674722 acatgagctaaggagtcacaagttcatgaccatatttagttttgaaatttatcatattatgcactttttt 20674791  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 6092907 - 6092857
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  6092907 gtattaaagtgcgggtaatgggcgtgagtacgggcatttagatgcccatag 6092857  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 20674932 - 20674982
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  20674932 gtattaaagtgcgggtaatgggcgcgagtacggacatttagatgcccatag 20674982  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 34776679 - 34776740
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  34776679 ttttgatttggcaaaatactattatttgcaaaattttatgtattgatttaaattcagttatg 34776740  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 34776766 - 34776816
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  34776766 gtattaaagtgcgggtaatggacgcgagtacgggcatttagatgcccatag 34776816  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 55760460 - 55760399
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  55760460 ttttgatttggcaaaatactattatttgcaaaattttatgtattgatttaaattcagttatg 55760399  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 31487436 - 31487376
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttat 159  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  31487436 ttttgatttggcaaaatactattatttgcaaaattttatgtatcgatttaaattcagttat 31487376  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 31487348 - 31487298
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  31487348 gtattaaagtgcgggtaatgggcgcgagtacgagcatttagatgcccatag 31487298  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 55760373 - 55760323
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| |||||||| |||||| ||||| |||||||||| ||||||    
T  55760373 gtattaaagtgcgggtaatgtgcgcgaatacggacatttagatgtccatag 55760323  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 14589766 - 14589827
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  14589766 ttttgatttggcaaaatactattatttgcaaaattttatgtattgatttaaattcagttatg 14589827  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 6463551 - 6463490
Alignment:
Q  99 ttttgatttggcaaaaaactattatttgcaaaattttatgtactgatttaaattcagttatg 160  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  6463551 ttttgatttagcaaaatactattatttgcaaaattttatgtattgatttaaattcagttatg 6463490  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 6463464 - 6463415
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccata 235  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  6463464 gtattaaagtgcgggtaatgggcgcgagtacggacatttagatgcccata 6463415  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 14589853 - 14589903
Alignment:
Q  186 gtattaaagtgagggtaatgggcgcgagtacgggcatttagatgcccatag 236  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  14589853 gtattaaagtgcgggtaatgggcgcgagtacggacatttagatgtccatag 14589903  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 11109981 - 11110041
Alignment:
Q  25 aaggagtcacaagttcatgactatattttgtttgaaatttatcgtattatgcacttttttc 85  Q
    ||||||||||||||| |||| |  ||||| ||| |||||||||||| |||||| |||||||    
T  11109981 aaggagtcacaagtttatgatttaattttatttaaaatttatcgtaatatgcaattttttc 11110041  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 5418 - 5478
Alignment:
Q  25 aaggagtcacaagttcatgactatattttgtttgaaatttatcgtattatgcacttttttc 85  Q
    ||||||||||||||| |||| |  ||||| ||| |||||||||||| |||||| |||||||    
T  5418 aaggagtcacaagtttatgatttaattttatttaaaatttatcgtaatatgcaattttttc 5478  T

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