View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_45 (Length: 237)
Name: NF7179_low_45
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 325129 - 325331
Alignment:
| Q |
19 |
tctctctctccgtgtcgttgttgttcatcttcatcatcgcaacaccacaaccgtaatcatagcttccttacgatcgctcagcagcatgaaggataaagat |
118 |
Q |
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| T |
325129 |
tctctctctccgtgtcgttgttgttcatcttcatcatcgcaacaccacaaccgtaatcatagcttccttacgatcgctcagcagcatgaaggataaagat |
325228 |
T |
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| Q |
119 |
agagataaggaaaaggaaacagagaagaaaaagtatcctatcggagccgaacattatcaactttacgaagagattggtcaaggcgttagtgcttccgttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325229 |
agagataaggaaaaggaaacagagaagaaaaagtatcctatcggagccgaacattatcaactttacgaagagattggtcaaggcgttagtgcttccgttc |
325328 |
T |
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| Q |
219 |
atc |
221 |
Q |
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||| |
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| T |
325329 |
atc |
325331 |
T |
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