View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_low_48 (Length: 233)

Name: NF7179_low_48
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_low_48
NF7179_low_48
[»] chr3 (13 HSPs)
chr3 (1-216)||(47877237-47877453)
chr3 (54-175)||(15671118-15671239)
chr3 (61-169)||(27143997-27144106)
chr3 (104-165)||(52992486-52992546)
chr3 (88-181)||(35322034-35322125)
chr3 (61-175)||(42163607-42163722)
chr3 (104-175)||(44041325-44041396)
chr3 (61-175)||(44291231-44291345)
chr3 (111-169)||(23208151-23208209)
chr3 (61-141)||(43862939-43863020)
chr3 (106-170)||(32720526-32720590)
chr3 (104-164)||(49419063-49419123)
chr3 (104-166)||(36258720-36258782)
[»] chr8 (11 HSPs)
chr8 (61-175)||(28462544-28462658)
chr8 (56-162)||(37919392-37919499)
chr8 (106-176)||(42654631-42654700)
chr8 (61-177)||(41675670-41675786)
chr8 (88-178)||(20821915-20822005)
chr8 (61-167)||(39065543-39065649)
chr8 (61-166)||(900243-900349)
chr8 (66-175)||(39534139-39534248)
chr8 (88-145)||(40607324-40607381)
chr8 (61-175)||(39209364-39209477)
chr8 (88-120)||(18131217-18131249)
[»] chr1 (12 HSPs)
chr1 (61-180)||(26855822-26855941)
chr1 (62-175)||(33827825-33827939)
chr1 (62-175)||(33840026-33840140)
chr1 (62-175)||(50468807-50468921)
chr1 (51-175)||(15419651-15419776)
chr1 (61-178)||(40391215-40391333)
chr1 (61-184)||(30627607-30627731)
chr1 (61-169)||(19066858-19066966)
chr1 (61-169)||(19114748-19114856)
chr1 (75-141)||(44109105-44109172)
chr1 (61-126)||(27742551-27742617)
chr1 (131-178)||(18910401-18910447)
[»] chr4 (9 HSPs)
chr4 (62-183)||(31647720-31647841)
chr4 (110-181)||(38319535-38319606)
chr4 (61-170)||(38320124-38320234)
chr4 (85-175)||(31241952-31242043)
chr4 (61-147)||(3319278-3319365)
chr4 (62-175)||(47397604-47397717)
chr4 (88-149)||(16831127-16831188)
chr4 (62-142)||(19147181-19147262)
chr4 (88-149)||(37461792-37461853)
[»] chr5 (8 HSPs)
chr5 (62-175)||(35185255-35185368)
chr5 (61-175)||(2611149-2611264)
chr5 (62-178)||(22180253-22180369)
chr5 (56-175)||(14863329-14863448)
chr5 (61-178)||(7609538-7609655)
chr5 (86-175)||(11320148-11320237)
chr5 (61-166)||(31619317-31619421)
chr5 (104-141)||(21052662-21052699)
[»] chr2 (11 HSPs)
chr2 (61-169)||(19889743-19889852)
chr2 (61-141)||(4141638-4141718)
chr2 (85-175)||(23788407-23788497)
chr2 (116-175)||(18243305-18243364)
chr2 (106-165)||(32345521-32345580)
chr2 (104-184)||(23760585-23760663)
chr2 (61-170)||(21646483-21646592)
chr2 (62-142)||(37913037-37913118)
chr2 (103-175)||(29526302-29526373)
chr2 (63-178)||(34501592-34501707)
chr2 (104-140)||(44818428-44818464)
[»] scaffold0078 (1 HSPs)
scaffold0078 (85-175)||(862-953)
[»] chr7 (7 HSPs)
chr7 (100-175)||(33194760-33194834)
chr7 (104-175)||(22035774-22035845)
chr7 (62-175)||(45907035-45907148)
chr7 (104-176)||(41434743-41434814)
chr7 (104-184)||(19689541-19689621)
chr7 (61-169)||(16861675-16861783)
chr7 (88-149)||(24937857-24937918)
[»] scaffold0886 (1 HSPs)
scaffold0886 (62-142)||(1138-1219)
[»] scaffold0006 (1 HSPs)
scaffold0006 (61-175)||(38799-38913)
[»] scaffold0034 (1 HSPs)
scaffold0034 (61-183)||(22417-22539)
[»] chr6 (3 HSPs)
chr6 (88-169)||(17506291-17506372)
chr6 (61-169)||(21809813-21809921)
chr6 (88-149)||(28048767-28048828)
[»] scaffold0117 (1 HSPs)
scaffold0117 (62-142)||(16863-16944)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 47877453 - 47877237
Alignment:
Q  1 ttcgataatgaaaagatgaatgcatgattatgaaatggagaatgttaatagtctacggaccattggttaagcatcaaatgaaacaaatttttatt-aaat 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| |||     
T  47877453 ttcgataatgaaaagatgaatgcatgattatgaaatggagaatgttaatagtccacggaccattggttatgcaccaaatgaaacaaatttttattaaaaa 47877354  T
Q  100 gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaatcaatgtctggggctgattaacaa 199  Q
     |||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || || ||||||  |  |||| |||||||    
T  47877353 atagtgtaattattatttaataaaaaatgatagtttatatttttaaaatataaaattttatttatagatttttcaaccaatgttcgatgctggttaacaa 47877254  T
Q  200 gactcgaaataaaattg 216  Q
    |||  ||||||||||||    
T  47877253 gacctgaaataaaattg 47877237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 15671239 - 15671118
Alignment:
Q  54 tacggaccattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataa 152  Q
    |||||| ||||||||||| | ||||||||  || |||||||||||  ||| |||||||||||||| ||||||||||| |||||||||||  || ||| ||    
T  15671239 tacggagcattggttaagaaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttcgaagaca-aa 15671141  T
Q  153 aattttatttatagattctttaa 175  Q
    |||||||||||||||||| ||||    
T  15671140 aattttatttatagattccttaa 15671118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 27143997 - 27144106
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaatg-tagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| ||||||||  || |||||||||||   || |||||||||||||||||||||||| | ||||||||||| ||| ||| |||||| ||    
T  27143997 cattggttaagcaacaaatgaactaagtttttattaaaaaataatgtaattattacttaataaaaagtcacagtttatatttctaatacagaaaattcta 27144096  T
Q  160 tttatagatt 169  Q
    ||||||||||    
T  27144097 tttatagatt 27144106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 52992486 - 52992546
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttata 165  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||    
T  52992486 tgtaattattact-aataaaaaatgatagtttatattttcaaaacagaaaattttatttata 52992546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 35322034 - 35322125
Alignment:
Q  88 tttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaatcaatg 181  Q
    |||||||||||  ||| |||||||||||||||||||||||||| ||||||||||| ||| ||  |||||| |||||||||||| ||||| |||||    
T  35322034 tttttattaaaaagtaatgtaattattacttaataaaaagtga-agtttatatttctaagac--aaaattctatttatagattttttaaccaatg 35322125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 42163722 - 42163607
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    |||||||||  || ||||||||  || |||||||||||  ||| ||||||||||||||||||||||||||  ||||||||||  || ||| |||||| ||    
T  42163722 cattggttacacaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacggtttatatttccaagacagaaaattcta 42163623  T
Q  160 tttatagattctttaa 175  Q
    || |||||||| ||||    
T  42163622 ttaatagattccttaa 42163607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 44041396 - 44041325
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    |||||||||||||||||||||||||| ||||||||||   || ||| |||||| ||||||||||||| ||||    
T  44041396 tgtaattattacttaataaaaagtgacagtttatattaccaagacagaaaattctatttatagattcattaa 44041325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 44291345 - 44291231
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| |||| |||  || | |||||||||  ||| |||||||||||||||||||||||||| |||||||||||  || |||  ||||| ||    
T  44291345 cattggttaagcaccaaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatatttccaagaca-gaaattcta 44291247  T
Q  160 tttatagattctttaa 175  Q
    ||||||||||| ||||    
T  44291246 tttatagattccttaa 44291231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 23208209 - 23208151
Alignment:
Q  111 attacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagatt 169  Q
    ||||||||||||||||||| |||||||||||| || ||| |||||| ||||||||||||    
T  23208209 attacttaataaaaagtgacagtttatattttcaagacagaaaattctatttatagatt 23208151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 43862939 - 43863020
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatattt 141  Q
    ||||||||||||  ||||||||  || |||||||||||  ||| |||||||||||||||||||| ||||| |||||||||||    
T  43862939 cattggttaagccccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaagagtgacagtttatattt 43863020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 32720590 - 32720526
Alignment:
Q  106 taattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattc 170  Q
    |||||||||||||||||| ||||| |||||||||||| || | | |||||| |||| ||||||||    
T  32720590 taattattacttaataaatagtgacagtttatattttcaagaaagaaaattctattaatagattc 32720526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 49419123 - 49419063
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttat 164  Q
    ||||||||||| |||||||||||||| | ||||||||| ||| ||| |||||| |||||||    
T  49419123 tgtaattattagttaataaaaagtgacaatttatatttctaatacagaaaattctatttat 49419063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 36258720 - 36258782
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatag 166  Q
    |||||| ||||||||||||||| ||| | ||||||||| ||| ||| |||||| |||||||||    
T  36258720 tgtaatgattacttaataaaaaatgacattttatatttctaagacagaaaattctatttatag 36258782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 28462658 - 28462544
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    |||||||||| || ||||||||  || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  || ||| |||||| |||    
T  28462658 cattggttaaacaccaaatgaagtaagtttttattaaaagtaatgtaattattacttaataaaaagtgatagtttatatttccaagacaaaaaattctat 28462559  T
Q  161 ttatagattctttaa 175  Q
    |||||||||||||||    
T  28462558 ttatagattctttaa 28462544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 37919392 - 37919499
Alignment:
Q  56 cggaccattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaa 154  Q
    |||| ||||||||||||| | ||| ||  ||||||||||||||  ||| |||||||||||||||||||||| ||| |||||||||||| |||||| ||||    
T  37919392 cggagcattggttaagcaccgaataaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacagtttatattttcaaaacaaaaaa 37919491  T
Q  155 ttttattt 162  Q
    ||||||||    
T  37919492 ttttattt 37919499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 42654631 - 42654700
Alignment:
Q  106 taattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaat 176  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||| ||||||||||||||    
T  42654631 taattattacttaataaaaaatgatagtttatatttctaagaca-aaaattttattgatagattctttaat 42654700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 177
Target Start/End: Complemental strand, 41675786 - 41675670
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| |||| |||  ||||||||||||||  | | | |||||||||||| ||||||| |||||||||||||||| ||||||  ||||| ||    
T  41675786 cattggttaagcaccaaaagaagtaaatttttattaaaaagaaatataattattacttgataaaaaatgatagtttatattttcaaaaca-gaaattcta 41675688  T
Q  160 tttatagattctttaatc 177  Q
    ||| ||||||| ||||||    
T  41675687 tttgtagattccttaatc 41675670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 20821915 - 20822005
Alignment:
Q  88 tttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaatca 178  Q
    |||||||||||  ||| |||||||||||||||||||||||||| | ||||||||||||| ||| | |||| ||| ||||||||  |||||||    
T  20821915 tttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagaca-acaattctatctatagatttcttaatca 20822005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 39065649 - 39065543
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaatg-tagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    |||||||||||||  ||| |||  ||||||||||||||   || ||| |||||||||| ||||||||||| ||||||||||||||| |||  ||||| ||    
T  39065649 cattggttaagcactaaaagaagtaaatttttattaaaaaataatgtcattattacttgataaaaagtgacagtttatatttttaagaca-gaaattcta 39065551  T
Q  160 tttataga 167  Q
    ||||||||    
T  39065550 tttataga 39065543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 900349 - 900243
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    |||||||||| || ||||| ||  || |||||||||||  ||| | |||||||||||||||||||| ||| |||||| ||||| || ||| |||||| ||    
T  900349 cattggttaaacaccaaataaagtaagtttttattaaaaagtaatataattattacttaataaaaaatgacagtttaaattttcaagacagaaaattata 900250  T
Q  160 tttatag 166  Q
    |||||||    
T  900249 tttatag 900243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 39534248 - 39534139
Alignment:
Q  66 gttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttat 164  Q
    |||||||| |||||||   ||||||||||||||  ||| |||||||||||||| |||||  |||| |||||||||||| || |||  ||||| || ||||    
T  39534248 gttaagcaccaaatgaggtaaatttttattaaaaagtaatgtaattattacttgataaagggtgacagtttatattttcaagaca-gaaattctaattat 39534150  T
Q  165 agattctttaa 175  Q
    |||||||||||    
T  39534149 agattctttaa 39534139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 40607324 - 40607381
Alignment:
Q  88 tttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaa 145  Q
    ||||||||||| ||||||||||||||||||||| |||||| | |  ||||||||||||    
T  40607324 tttttattaaaagtagtgtaattattacttaatcaaaagtcaaaacttatatttttaa 40607381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 39209477 - 39209364
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| |||| |||  ||||||||||||||  ||  |||| |||||| ||||||||| |||| |||||||||||  |||||| |||||| ||    
T  39209477 cattggttaagcaccaaacgaagtaaatttttattaaaaagtgatgta-ttattatttaataaaa-gtgacagtttatatttccaaaacagaaaattcta 39209380  T
Q  160 tttatagattctttaa 175  Q
    |||||| |||| ||||    
T  39209379 tttataaattccttaa 39209364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 18131217 - 18131249
Alignment:
Q  88 tttttattaaatgtagtgtaattattacttaat 120  Q
    ||||||||||| |||||||||||||||||||||    
T  18131217 tttttattaaaagtagtgtaattattacttaat 18131249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 26855941 - 26855822
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    ||||||||||||| ||||| ||  |||||||||||||| ||| |||||||||||||| ||||||||||| || ||||||||  || ||| |||||| |||    
T  26855941 cattggttaagcaccaaataaagtaaatttttattaaaagtaatgtaattattacttgataaaaagtgacagattatatttccaagacaaaaaattctat 26855842  T
Q  161 ttatagattctttaatcaat 180  Q
    ||||||||||||||| ||||    
T  26855841 ttatagattctttaaccaat 26855822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 33827939 - 33827825
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    |||||||||| | ||||| ||| || |||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||  || ||| ||||||||||    
T  33827939 attggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttat 33827840  T
Q  161 ttatagattctttaa 175  Q
    |||||||||| ||||    
T  33827839 ttatagattccttaa 33827825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 33840026 - 33840140
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    |||||||||| | ||||| ||| || |||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||  || ||| ||||||||||    
T  33840026 attggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttat 33840125  T
Q  161 ttatagattctttaa 175  Q
    |||||||||| ||||    
T  33840126 ttatagattccttaa 33840140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 50468921 - 50468807
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    |||||||||| ||||| | ||  ||||||||||||||  ||| |||||||||||||||||||||| ||| || |||||||| ||| | | ||||||||||    
T  50468921 attggttaagtatcaagtaaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacaggttatatttctaagatagaaaattttat 50468822  T
Q  161 ttatagattctttaa 175  Q
    |||||||||| ||||    
T  50468821 ttatagattccttaa 50468807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 15419776 - 15419651
Alignment:
Q  51 gtctacggaccattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaaca 149  Q
    |||| |||| |||||||||| || ||||| ||  ||||||||||||||  ||| | |||||||||||||||||||||| | |||||||||||  || |||    
T  15419776 gtctccggagcattggttaaacaccaaataaagtaaatttttattaaaaagtaatataattattacttaataaaaagtaacagtttatatttccaataca 15419677  T
Q  150 taaaattttatttatagattctttaa 175  Q
     |||||| ||||||||||||| ||||    
T  15419676 aaaaattctatttatagattcattaa 15419651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 40391333 - 40391215
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| ||||||||   | ||||||| |||  ||| |||||||||||||| ||||||||||| |||||||||||| || ||| ||||||  |    
T  40391333 cattggttaagcaccaaatgaagtgagtttttatcaaaaagtaatgtaattattacttgataaaaagtgacagtttatattttcaagacagaaaattcga 40391234  T
Q  160 tttatagattctttaatca 178  Q
    ||||||||||  |||||||    
T  40391233 tttatagatttcttaatca 40391215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 30627731 - 30627607
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttatt--aaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttt 158  Q
    ||||||||||||| |||  |||  ||||||||| |  ||| ||| |||||| ||||||| ||||||||||| || ||||||||  || |||| ||||| |    
T  30627731 cattggttaagcaccaagagaagtaaatttttaattaaaaagtaatgtaatcattactttataaaaagtgacaggttatatttccaagacat-aaattct 30627633  T
Q  159 atttatagattctttaatcaatgtct 184  Q
    |||||||||||| ||||||| |||||    
T  30627632 atttatagattccttaatcagtgtct 30627607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 19066858 - 19066966
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||  ||||| ||  ||||||||||||||  ||| ||||||||||||||  |||||||||| | ||||||||| ||| ||| | |||| ||    
T  19066858 cattggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattcta 19066956  T
Q  160 tttatagatt 169  Q
    ||||||||||    
T  19066957 tttatagatt 19066966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 19114748 - 19114856
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||  ||||| ||  ||||||||||||||  ||| ||||||||||||||  |||||||||| | ||||||||| ||| ||| | |||| ||    
T  19114748 cattggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattcta 19114846  T
Q  160 tttatagatt 169  Q
    ||||||||||    
T  19114847 tttatagatt 19114856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 44109172 - 44109105
Alignment:
Q  75 caaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatattt 141  Q
    ||||||||  || |||||||||||  ||| ||||||||||||||||||||||| || |||||||||||    
T  44109172 caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagggacagtttatattt 44109105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 27742551 - 27742617
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaag 126  Q
    ||||||||||||| |||| |||  || |||||||||||  ||| |||||||||||||||||||||||    
T  27742551 cattggttaagcaacaaaagaagtaattttttattaaaaagtaatgtaattattacttaataaaaag 27742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 18910447 - 18910401
Alignment:
Q  131 agtttatatttttaaaacataaaattt-tatttatagattctttaatca 178  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||    
T  18910447 agtttatatttttaaaa--taaaatttctatttatagattctttaatca 18910401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 31647720 - 31647841
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    |||||||||||| |||| |||| || |||||||||||  ||| |||||||||||||| ||||||||||||||||||||||| ||| |||  ||||| |||    
T  31647720 attggttaagcaccaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagtgatagtttatatttctaagaca-gaaattctat 31647818  T
Q  161 ttatagattctttaatcaatgtc 183  Q
    |||||||||||||||||| ||||    
T  31647819 ttatagattctttaatcagtgtc 31647841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 38319606 - 38319535
Alignment:
Q  110 tattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaatcaatg 181  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||||| |||| |||||    
T  38319606 tattacttaataaaaagtgacagtttatattttcaaaacagaaaattctatttatagattccttaaccaatg 38319535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 38320234 - 38320124
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    |||| |||||||||||||| ||  || |||||||||||  ||| ||||||||||||||||||| |||||| |||||||||||  || ||| |||||| ||    
T  38320234 cattagttaagcatcaaataaagtaagtttttattaaaaagtaatgtaattattacttaataagaagtgacagtttatatttccaagacagaaaattcta 38320135  T
Q  160 tttatagattc 170  Q
    |||||||||||    
T  38320134 tttatagattc 38320124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 31242043 - 31241952
Alignment:
Q  85 aaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    ||||||||||||||  ||| ||||||||||| ||||||||||||||  ||||||||||| || ||| |||||| ||||||||||||| ||||    
T  31242043 aaatttttattaaaaagtaatgtaattattatttaataaaaagtgaccgtttatattttcaagacagaaaattctatttatagattccttaa 31241952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 3319365 - 3319278
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttatt-aaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaa 147  Q
    ||||| |||||||||||| |||| ||||||||||| ||| ||| | ||||||||| || || |||| ||| |||||||||||||||||    
T  3319365 cattgattaagcatcaaaagaaataaatttttattaaaaggtaatataattattatttgatgaaaaatgacagtttatatttttaaaa 3319278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 47397604 - 47397717
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttatt-aaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    |||||||||||| |||| | |  ||||||||||| ||| ||| | ||||||||| || ||||||||||| ||||||||||| ||||| |  ||||| |||    
T  47397604 attggttaagcaccaaaagtagtaaatttttatttaaaagtaatataattattatttgataaaaagtgacagtttatatttctaaaata-gaaattctat 47397702  T
Q  161 ttatagattctttaa 175  Q
    |||||||||| ||||    
T  47397703 ttatagattccttaa 47397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 16831188 - 16831127
Alignment:
Q  88 tttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaaca 149  Q
    ||||||| ||| ||||| ||||||||||||||| |||||| | | |||||||||||||||||    
T  16831188 tttttataaaaagtagtataattattacttaatcaaaagtcaaaatttatatttttaaaaca 16831127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 19147262 - 19147181
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaa-atgtagtgtaattattacttaataaaaagtgatagtttatatttt 142  Q
    |||| ||||||| |||| |||  || |||||||||| | ||| ||||||||||| || ||||||||||| ||||||||||||    
T  19147262 attgattaagcaccaaaagaagtaagtttttattaataagtaatgtaattattatttgataaaaagtgacagtttatatttt 19147181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 37461853 - 37461792
Alignment:
Q  88 tttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaaca 149  Q
    ||||||| ||| || |||||||||||||||||| |||| | | | |||||||||||||||||    
T  37461853 tttttataaaaagtggtgtaattattacttaattaaaaatcaaaatttatatttttaaaaca 37461792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 35185255 - 35185368
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    |||||||||||| ||||| ||| || |||||||||||  ||| ||||||||||||| ||||||| |||| |||||||||||| || |||||||||| |||    
T  35185255 attggttaagcaccaaataaaataagtttttattaaaaagtaatgtaattattactaaataaaa-gtgacagtttatattttcaagacataaaattctat 35185353  T
Q  161 ttatagattctttaa 175  Q
    |||||||||||||||    
T  35185354 ttatagattctttaa 35185368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 2611264 - 2611149
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| ||||||||  || |||||||||||  ||| |||||||||||||||||||||||||| || ||||||||  || ||||||| || ||    
T  2611264 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagacataaatttcta 2611165  T
Q  160 tttatagattctttaa 175  Q
    ||||||||||| ||||    
T  2611164 tttatagattccttaa 2611149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 22180369 - 22180253
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaatg-tagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    |||||||||||| ||||| ||| ||||||||||||||   || | ||||||||| |||||||||| ||| |||||||||||| |||| | ||||||||||    
T  22180369 attggttaagcaccaaataaaataaatttttattaaaaaataatataattattatttaataaaaa-tgacagtttatattttcaaaatagaaaattttat 22180271  T
Q  161 ttatagattctttaatca 178  Q
    |||||||||| |||||||    
T  22180270 ttatagattccttaatca 22180253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 14863329 - 14863448
Alignment:
Q  56 cggaccattggttaagcatcaaatgaaacaaatttttattaaatgt-agtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaa 154  Q
    |||| ||||||||||||| ||||  ||  || |||||||||||  | | |||||||||||||| ||||||||||| |||||||||||| || |||| |||    
T  14863329 cggaacattggttaagcaccaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagtgacagtttatattttcaagacat-aaa 14863427  T
Q  155 ttttatttatagattctttaa 175  Q
    || ||||||||||||||||||    
T  14863428 ttatatttatagattctttaa 14863448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 7609655 - 7609538
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| |||| |||  || |||||||||||  ||| |||||||||||||| ||||||| |||||||||||||||  ||||||  ||||| ||    
T  7609655 cattggttaagcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaaatgatagtttatatttccaaaaca-gaaattcta 7609557  T
Q  160 tttatagattctttaatca 178  Q
     |||||||||| |||||||    
T  7609556 attatagattccttaatca 7609538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 11320148 - 11320237
Alignment:
Q  86 aatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    |||||||||||||  ||| |||||||||||||| ||||||||||| ||||||||||| ||| | |  |||||||| |||||||||| ||||    
T  11320148 aatttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttctaagata-gaaattttaattatagattccttaa 11320237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 31619317 - 31619421
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttatt-aaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| ||||||||  ||||||||||| ||| ||| ||||||||||| || || | ||||||  |||||||||| ||| ||| |||||| ||    
T  31619317 cattggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaattattatttcat-agaagtga-cgtttatatttctaagacagaaaattcta 31619414  T
Q  160 tttatag 166  Q
    |||||||    
T  31619415 tttatag 31619421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 21052699 - 21052662
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatattt 141  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  21052699 tgtaattattacttgataaaaagtgacagtttatattt 21052662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 19889743 - 19889852
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||||||||||||  || |||| ||||||  ||| ||||||||||||||||||||| |||| |  ||||||||  ||||||||||||| ||    
T  19889743 cattggttaagcatcaaatgaagtaagttttcattaaaaagtaatgtaattattacttaataaaaggtgacatattatatttccaaaacataaaattcta 19889842  T
Q  160 tttatagatt 169  Q
    ||||||||||    
T  19889843 tttatagatt 19889852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 4141638 - 4141718
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatattt 141  Q
    ||||| ||||||||||||| ||  |||||||||||||| ||| ||||||||||||| ||||||||||||  ||||||||||    
T  4141638 cattgattaagcatcaaataaagtaaatttttattaaaagtaatgtaattattactgaataaaaagtgacggtttatattt 4141718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 23788497 - 23788407
Alignment:
Q  85 aaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    ||||||||||||||  ||| |||||||||||||||||||||| ||||| |||||||||| |||| || ||||| |||||||||||| |||||    
T  23788497 aaatttttattaaaaagtaatgtaattattacttaataaaaaatgataatttatattttcaaaatat-aaattctatttatagattttttaa 23788407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 18243364 - 18243305
Alignment:
Q  116 ttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    |||||||||||||| |||||||||||  |||||| |||||||||||||||||||| ||||    
T  18243364 ttaataaaaagtgaaagtttatatttccaaaacaaaaaattttatttatagattccttaa 18243305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 32345521 - 32345580
Alignment:
Q  106 taattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttata 165  Q
    ||||||||| |||||||||| ||| ||||||||||||||| ||| |||||| ||||||||    
T  32345521 taattattatttaataaaaaatgacagtttatatttttaagacagaaaattctatttata 32345580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 23760663 - 23760585
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaatcaatgtct 184  Q
    |||||||||||||| ||||||| | | ||||||||||||||| |||| ||||| ||||||||||||| |||| || |||||    
T  23760663 tgtaattattacttgataaaaa-taagagtttatatttttaagacat-aaattatatttatagattcgttaaccagtgtct 23760585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 21646592 - 21646483
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    |||||||||| || ||||||||  || |||| ||||||  ||| ||||||||||||||||| |||||||| | |||||||||  || ||| |||||| ||    
T  21646592 cattggttaaacaccaaatgaagtaagttttcattaaaaagtaatgtaattattacttaat-aaaagtgacactttatatttccaagacagaaaattcta 21646494  T
Q  160 tttatagattc 170  Q
    | |||||||||    
T  21646493 tgtatagattc 21646483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 37913118 - 37913037
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaatgt-agtgtaattattacttaataaaaagtgatagtttatatttt 142  Q
    ||||||||||||||||| |||  || |||||||||||  | | ||| |||||||||| |||||||||||  |||||||||||    
T  37913118 attggttaagcatcaaaagaagtaagtttttattaaaaattaatgtgattattacttgataaaaagtgacggtttatatttt 37913037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 29526373 - 29526302
Alignment:
Q  103 gtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    ||||||| ||||||| || |||| | ||| ||||||||||||| |  |||| |||||||||||||||||||||    
T  29526373 gtgtaatcattactttattaaaaataatattttatatttttaagat-taaatttttatttatagattctttaa 29526302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 34501707 - 34501592
Alignment:
Q  63 ttggttaagcatc-aaatgaaacaaatttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatt 161  Q
    ||||||||||| | |||| ||| || ||||||| |||  | ||||||||||||||||||||||| | | |  |||||||||||| ||| |   |||||||    
T  34501707 ttggttaagcaaccaaatcaaataactttttataaaaaattgtgtaattattacttaataaaaaatcaaaaattatatttttaagaca-acttttttatt 34501609  T
Q  162 tatagattctttaatca 178  Q
    ||||||||| |||||||    
T  34501608 tatagattccttaatca 34501592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 44818464 - 44818428
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatt 140  Q
    |||||||||||||||||||||||||| | ||||||||    
T  44818464 tgtaattattacttaataaaaagtgacaatttatatt 44818428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 953 - 862
Alignment:
Q  85 aaatttttatta-aatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    |||||||||||| |||||| ||||||||||| |||||||||| |||||||||||||||  || ||| |||||| ||||||||||||| ||||    
T  953 aaatttttattagaatgtaatgtaattattatttaataaaaaatgatagtttatatttccaagacagaaaattctatttatagattccttaa 862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 33194760 - 33194834
Alignment:
Q  100 gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||| ||| ||| |||||||||| ||||||||||    
T  33194760 gtagtgtaatcattacttaatcaaatgtgatagtttatatttttaagaca-aaacttttatttatggattctttaa 33194834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 22035774 - 22035845
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaa 175  Q
    ||||||||||||||| |||||||||| |||||||||||  || ||| |||||| ||||||||||||| ||||    
T  22035774 tgtaattattacttattaaaaagtgacagtttatatttccaagacagaaaattctatttatagattcattaa 22035845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 45907148 - 45907035
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttat 160  Q
    ||||||||||||| ||| |||  || |||||||||||  ||| |||||||||||||| ||||||||||| |||||||||||  || ||| |||| | |||    
T  45907148 attggttaagcataaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttacaagaca-aaaaatctat 45907050  T
Q  161 ttatagattctttaa 175  Q
    |||||||||| ||||    
T  45907049 ttatagattccttaa 45907035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 41434743 - 41434814
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaat 176  Q
    ||||||||||| || ||||||||||| ||||||||||| ||| |||  ||||| |||||||||||||||||||    
T  41434743 tgtaattattatttgataaaaagtgacagtttatatttctaagaca-gaaattatatttatagattctttaat 41434814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 19689541 - 19689621
Alignment:
Q  104 tgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagattctttaatcaatgtct 184  Q
    ||||||||||| ||||||  ||||||||||||||||||  || | | ||| || ||||||||||||| ||||||| |||||    
T  19689541 tgtaattattatttaatacgaagtgatagtttatatttacaagatagaaagttgtatttatagattccttaatcagtgtct 19689621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 16861675 - 16861783
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    |||| |||||||| |||| |||| ||  ||||||||||  ||| |||||||| || |||||||||| ||| |||||||||||  || |||| ||||| ||    
T  16861675 catttgttaagcaccaaaagaaataaggttttattaaaaagtaatgtaattaatatttaataaaaaatgacagtttatatttccaagacat-aaattcta 16861773  T
Q  160 tttatagatt 169  Q
    ||||||||||    
T  16861774 tttatagatt 16861783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 24937857 - 24937918
Alignment:
Q  88 tttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaaca 149  Q
    ||||||| ||| || |||||||||||||||||| |||||| | | | |||||||||||||||    
T  24937857 tttttataaaaagtggtgtaattattacttaattaaaagtcaaaatctatatttttaaaaca 24937918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 1219 - 1138
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttt 142  Q
    |||||||||| ||||||| ||| ||  ||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||    
T  1219 attggttaagaatcaaataaaataagcttttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatatttt 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 38799 - 38913
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||| ||||||| ||| || |||||||||||  ||| |||||||||||||| ||||||| ||| |||||||||||  || | || ||||| ||    
T  38799 cattggttaagaatcaaataaaataagtttttattaaaaagtaatgtaattattacttgataaaaaatgacagtttatatttccaagatat-aaattcta 38897  T
Q  160 tttatagattctttaa 175  Q
    |||||||||| |||||    
T  38898 tttatagattttttaa 38913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 22539 - 22417
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||| |||| |||  || |||||||||||  ||| ||||||||||| || |||||||||||  ||||||||||  || ||| ||| || ||    
T  22539 cattggttaagcaccaaaagaagtaagtttttattaaagagtaatgtaattattatttgataaaaagtgacggtttatatttccaacaca-aaagttata 22441  T
Q  160 tttatagattctttaatcaatgtc 183  Q
    ||||||||||| ||||||| ||||    
T  22440 tttatagattccttaatcagtgtc 22417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 17506291 - 17506372
Alignment:
Q  88 tttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaattttatttatagatt 169  Q
    |||||||||||  ||| |||||||||||||| ||||||||||| |||||||||||  |||| || ||||| ||||||||||||    
T  17506291 tttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttccaaaatat-aaattatatttatagatt 17506372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 21809921 - 21809813
Alignment:
Q  61 cattggttaagcatcaaatgaaacaaatttttattaaat-gtagtgtaattattacttaataaaaagtgatagtttatatttttaaaacataaaatttta 159  Q
    ||||||||||||   |||| ||| || |||||||||||  |||  ||||||||||||| ||||||||||| | ||||||||| ||| ||| | |||| ||    
T  21809921 cattggttaagcgctaaataaaataagtttttattaaaaagtaacgtaattattacttgataaaaagtgacaatttatatttctaagaca-acaattcta 21809823  T
Q  160 tttatagatt 169  Q
    ||||||||||    
T  21809822 tttatagatt 21809813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 28048828 - 28048767
Alignment:
Q  88 tttttattaaatgtagtgtaattattacttaataaaaagtgatagtttatatttttaaaaca 149  Q
    ||||||| ||| || |||||||||||||||||| |||||| | |  ||||||||||||||||    
T  28048828 tttttataaaaagtggtgtaattattacttaattaaaagtcaaaacttatatttttaaaaca 28048767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 16944 - 16863
Alignment:
Q  62 attggttaagcatcaaatgaaacaaatttttattaaatg-tagtgtaattattacttaataaaaagtgatagtttatatttt 142  Q
    |||||||||||| |||| |||| || |||||||||||   |  | |||||||||||| ||||||||||| ||||||||||||    
T  16944 attggttaagcaccaaaagaaataagtttttattaaaaaattatataattattacttgataaaaagtgacagtttatatttt 16863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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