View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_low_6 (Length: 748)

Name: NF7179_low_6
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_low_6
NF7179_low_6
[»] chr1 (22 HSPs)
chr1 (7-526)||(43949069-43949588)
chr1 (588-729)||(43949650-43949791)
chr1 (56-184)||(51295693-51295820)
chr1 (56-172)||(10881816-10881932)
chr1 (56-182)||(29587100-29587226)
chr1 (67-185)||(24466507-24466626)
chr1 (67-152)||(44595706-44595791)
chr1 (58-182)||(34710890-34711014)
chr1 (62-184)||(18436288-18436410)
chr1 (56-182)||(51050028-51050153)
chr1 (77-180)||(42549167-42549270)
chr1 (56-146)||(39275876-39275966)
chr1 (58-173)||(31262416-31262531)
chr1 (56-130)||(33828101-33828175)
chr1 (56-130)||(33839790-33839864)
chr1 (56-161)||(18023781-18023886)
chr1 (81-182)||(36313612-36313713)
chr1 (57-182)||(15401706-15401831)
chr1 (126-182)||(39412436-39412492)
chr1 (56-153)||(15279008-15279106)
chr1 (56-176)||(8547346-8547466)
chr1 (56-176)||(8612585-8612705)
[»] chr2 (18 HSPs)
chr2 (56-182)||(44966000-44966126)
chr2 (95-184)||(41542733-41542822)
chr2 (68-182)||(44022139-44022253)
chr2 (75-182)||(6461219-6461326)
chr2 (56-182)||(31663375-31663500)
chr2 (57-182)||(34929172-34929297)
chr2 (56-179)||(40711152-40711275)
chr2 (94-176)||(12972691-12972773)
chr2 (100-177)||(2080510-2080587)
chr2 (56-122)||(27269136-27269202)
chr2 (56-154)||(31742702-31742800)
chr2 (95-180)||(17696021-17696104)
chr2 (56-164)||(25220778-25220886)
chr2 (57-184)||(25396881-25397008)
chr2 (56-130)||(16721595-16721669)
chr2 (57-171)||(20203600-20203714)
chr2 (134-176)||(30545592-30545634)
chr2 (67-120)||(8996570-8996623)
[»] chr4 (30 HSPs)
chr4 (56-182)||(55322919-55323045)
chr4 (56-182)||(47388500-47388626)
chr4 (57-182)||(50328350-50328475)
chr4 (58-182)||(53133507-53133631)
chr4 (56-182)||(26740796-26740922)
chr4 (72-182)||(49250017-49250127)
chr4 (56-183)||(17340354-17340481)
chr4 (56-182)||(46393180-46393306)
chr4 (56-180)||(4442258-4442382)
chr4 (68-183)||(37056226-37056341)
chr4 (56-159)||(31204310-31204413)
chr4 (56-182)||(12799923-12800049)
chr4 (67-181)||(41235995-41236109)
chr4 (67-153)||(45891339-45891425)
chr4 (59-176)||(21894755-21894872)
chr4 (58-155)||(42674058-42674155)
chr4 (56-159)||(34118901-34119004)
chr4 (56-173)||(8171080-8171198)
chr4 (67-153)||(48622251-48622337)
chr4 (56-120)||(16067812-16067876)
chr4 (55-131)||(24453190-24453266)
chr4 (96-180)||(45088201-45088285)
chr4 (56-183)||(34291272-34291399)
chr4 (95-176)||(2554069-2554150)
chr4 (56-112)||(31216952-31217008)
chr4 (56-138)||(33176507-33176589)
chr4 (142-182)||(45219917-45219957)
chr4 (95-154)||(12798205-12798264)
chr4 (56-181)||(14593575-14593700)
chr4 (139-192)||(22019516-22019569)
[»] chr7 (24 HSPs)
chr7 (75-182)||(36827786-36827893)
chr7 (56-182)||(17354396-17354522)
chr7 (88-182)||(42306248-42306342)
chr7 (56-181)||(37828374-37828500)
chr7 (56-182)||(48633897-48634023)
chr7 (56-183)||(40019735-40019862)
chr7 (56-181)||(3767108-3767233)
chr7 (72-180)||(23358497-23358605)
chr7 (56-182)||(25971472-25971593)
chr7 (57-182)||(31289441-31289566)
chr7 (71-158)||(20009652-20009739)
chr7 (56-146)||(48046895-48046983)
chr7 (66-123)||(48339745-48339802)
chr7 (56-182)||(23363779-23363903)
chr7 (57-173)||(676267-676385)
chr7 (120-173)||(39983188-39983241)
chr7 (100-173)||(42121404-42121477)
chr7 (56-173)||(43251860-43251976)
chr7 (100-176)||(48723231-48723307)
chr7 (95-169)||(3622276-3622350)
chr7 (58-144)||(11885442-11885528)
chr7 (92-176)||(48030072-48030154)
chr7 (57-118)||(25594593-25594654)
chr7 (126-179)||(32903089-32903142)
[»] chr5 (27 HSPs)
chr5 (56-182)||(25983087-25983213)
chr5 (56-184)||(19961578-19961708)
chr5 (56-183)||(36527451-36527577)
chr5 (67-176)||(14575908-14576017)
chr5 (56-179)||(40298236-40298359)
chr5 (67-180)||(7406197-7406310)
chr5 (56-173)||(8234029-8234145)
chr5 (57-182)||(28574793-28574918)
chr5 (77-173)||(1352828-1352924)
chr5 (56-138)||(30685601-30685683)
chr5 (56-182)||(13951073-13951199)
chr5 (95-173)||(29429689-29429767)
chr5 (67-176)||(25693695-25693804)
chr5 (56-179)||(1860136-1860259)
chr5 (59-176)||(16843924-16844042)
chr5 (56-141)||(3938431-3938516)
chr5 (100-173)||(12289088-12289161)
chr5 (73-181)||(42011298-42011404)
chr5 (56-120)||(30721423-30721487)
chr5 (58-133)||(14309927-14310002)
chr5 (69-124)||(15591690-15591745)
chr5 (57-183)||(41816494-41816620)
chr5 (56-180)||(3257407-3257519)
chr5 (77-155)||(4746095-4746173)
chr5 (56-146)||(18334398-18334488)
chr5 (56-157)||(14622453-14622553)
chr5 (56-138)||(4702573-4702656)
[»] chr8 (17 HSPs)
chr8 (57-182)||(4993209-4993334)
chr8 (56-182)||(39108515-39108641)
chr8 (55-181)||(32062301-32062427)
chr8 (56-162)||(40740721-40740827)
chr8 (69-184)||(3727116-3727231)
chr8 (58-180)||(8669378-8669500)
chr8 (57-182)||(10361103-10361228)
chr8 (57-173)||(43027827-43027943)
chr8 (56-178)||(19174098-19174220)
chr8 (79-179)||(30203408-30203508)
chr8 (55-131)||(35878989-35879065)
chr8 (57-181)||(38666404-38666526)
chr8 (56-119)||(5957038-5957101)
chr8 (67-182)||(44976091-44976205)
chr8 (56-182)||(4989195-4989323)
chr8 (56-146)||(36434699-36434790)
chr8 (56-181)||(4810933-4811058)
[»] chr3 (18 HSPs)
chr3 (56-182)||(53287441-53287567)
chr3 (71-181)||(12789848-12789958)
chr3 (56-181)||(24657203-24657328)
chr3 (56-173)||(42791048-42791163)
chr3 (56-144)||(28392154-28392242)
chr3 (56-182)||(20379048-20379174)
chr3 (59-182)||(30732817-30732940)
chr3 (56-181)||(37700210-37700334)
chr3 (57-159)||(32733650-32733752)
chr3 (56-183)||(41519470-41519599)
chr3 (59-182)||(20796429-20796553)
chr3 (57-162)||(42760416-42760524)
chr3 (112-182)||(46750140-46750209)
chr3 (108-184)||(36771826-36771903)
chr3 (100-173)||(37311728-37311801)
chr3 (100-182)||(28554234-28554316)
chr3 (100-173)||(45054724-45054797)
chr3 (95-176)||(54362109-54362190)
[»] chr6 (15 HSPs)
chr6 (56-181)||(24547962-24548087)
chr6 (56-184)||(4844442-4844570)
chr6 (100-183)||(9318795-9318880)
chr6 (61-163)||(11842261-11842363)
chr6 (57-182)||(3159570-3159695)
chr6 (57-182)||(13243786-13243911)
chr6 (56-183)||(2617028-2617155)
chr6 (56-179)||(17515309-17515432)
chr6 (56-181)||(3337663-3337787)
chr6 (58-180)||(9429545-9429667)
chr6 (72-182)||(33755407-33755517)
chr6 (100-176)||(7509639-7509715)
chr6 (56-121)||(30323079-30323144)
chr6 (67-181)||(2359699-2359813)
chr6 (56-173)||(2557259-2557377)
[»] scaffold0006 (1 HSPs)
scaffold0006 (56-168)||(50593-50705)
[»] scaffold0050 (1 HSPs)
scaffold0050 (55-182)||(37225-37350)
[»] scaffold0047 (1 HSPs)
scaffold0047 (56-184)||(66172-66304)
[»] scaffold0329 (1 HSPs)
scaffold0329 (56-176)||(8223-8343)
[»] scaffold0250 (1 HSPs)
scaffold0250 (91-176)||(9036-9121)
[»] scaffold0005 (1 HSPs)
scaffold0005 (56-181)||(223678-223803)
[»] scaffold0004 (1 HSPs)
scaffold0004 (72-181)||(122419-122528)


Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 7 - 526
Target Start/End: Original strand, 43949069 - 43949588
Alignment:
Q  7 agtgagatgaagaaataatactattattatgaatttactaattataatgttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43949069 agtgagatgaagaaataatactattattatgaatttactaattataatgttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaa 43949168  T
Q  107 tgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactacccatgtttttattgtaattgtattaa 206  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43949169 tgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtgccctaagggcacaagttagcactacccatgtttttattgtaattgtattaa 43949268  T
Q  207 ccattgtatgaatctttaatttgttaaatatttgtaccatcctgttgtaaattcagagaagaaatataaaaataagtttgttattattctttggaaaata 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43949269 ccattgtatgaatctttaatttgttaaatatttgtaccatcctgttgtaaattcagagaagaaatataaaaataagtttgttattattctttggaaaata 43949368  T
Q  307 ccaaggaaaacaaatataacttgaatagtgccccttagggaacatcgctgtacaacacactagctgaaaacactcaatgaaaaactaacttctttcctca 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43949369 ccaaggaaaacaaatataacttgaatagtgctccttagggaacatccctgtacagcacactagctgaaaacactcaatgaaaaactaacttctttcctca 43949468  T
Q  407 ctccccgtacaaaatatcctcgtgacatggtctccacttcctcataactacatccctaatccctataactgactttccaccatgcttcagttttatgcat 506  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43949469 ctccccgtacaaaatatcctcgtgacatggtctccacttgctcataactacatccctaatccctataactgactttccaccatgcttcagttttatgcat 43949568  T
Q  507 tgcagggcacaatgcttcag 526  Q
    ||||||||||||||||||||    
T  43949569 tgcagggcacaatgcttcag 43949588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 588 - 729
Target Start/End: Original strand, 43949650 - 43949791
Alignment:
Q  588 gaatattaggtaatgcaccaagtattttggaggtataaataagagttttgtatagtaaatttctcttattcagctttttacacatgtaagattcttggtg 687  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43949650 gaatattaggcaatgcaccaagtattttggaggtatcaataagagttgtgtatagtaaatttctcttattcagcttcttacacatgtaagattcttggtg 43949749  T
Q  688 gtactttcttgtccatatcatcttcaaaggcactgaagatcg 729  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43949750 gtactttcttgtccatatcatcttcaaaggcactgaagatcg 43949791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 51295820 - 51295693
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||| || |||||||||||| ||||||||    
T  51295820 ttattggaatgtgtgcattacatttaatctttaactttttaatgaattgaatgcacaaaattttagaaattatttatt-ttttgggtttcttaacatgtg 51295722  T
Q  156 ccctaagggcacaagttagcactacccat 184  Q
    ||||||||||||||||||||| |||||||    
T  51295721 ccctaagggcacaagttagcagtacccat 51295693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 10881932 - 10881816
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||| |||||||||||||||||||| || ||| |||||||||||||||| |||||||||| || ||||||||||||||| |||||  |||||||    
T  10881932 ttattagaatgtgtgcattacatttaatctttaattttttaatgaattgaatgcataaaattttagggaatatttcttcttttggttttcttgacatgtg 10881833  T
Q  156 ccctaagggcacaagtt 172  Q
    |||||||||||||||||    
T  10881832 ccctaagggcacaagtt 10881816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 29587226 - 29587100
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| ||||||||  ||||| |||| ||||||  |||| |||||||||||| |||||||||||  |||| ||||||||||||||| ||||||||    
T  29587226 ttattggaatgtgtgcattttatttagtctttaacttttaaatgcattgaatgcacataattttagagaacatttattcttttgggtttcttaacatgtg 29587127  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    |||||||||||||||||  ||||||||    
T  29587126 ccctaagggcacaagttcacactaccc 29587100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 24466626 - 24466507
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgt-aatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggc 165  Q
    |||||||||||||||||||| |||||| | ||| ||||||||| ||||||||||||||| |||||||| |||||  ||| | |||||||||||||||  |    
T  24466626 tgtgcattacatttaatctttaacttttttaattaattgaatgtacaaaattttagagaatatttctttttttgaattttttaacatgtgccctaagaac 24466527  T
Q  166 acaagttagcactacccatg 185  Q
    ||||||||| |||| |||||    
T  24466526 acaagttagtactatccatg 24466507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 44595791 - 44595706
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacat 152  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||| ||||||||||||| | ||||| |||||    
T  44595791 tgtgcattacatttaaactttaactttttaatgaattgaatgcacaaaattttaaagaatatttcttcttttagatttcttaacat 44595706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 34711014 - 34710890
Alignment:
Q  58 attggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgcc 157  Q
    |||| ||| |||| ||||||||||||||| | |||| |||||| ||||||||||| ||||||| | | || |||||||||| || |||| ||||||| ||    
T  34711014 attgaaatgtgtgtattacatttaatctttagctttttaatgagttgaatgcacacaattttataaaatacttcttcttttaggattcttaacatgtacc 34710915  T
Q  158 ctaagggcacaagttagcactaccc 182  Q
    |||||| ||||||||| ||||||||    
T  34710914 ctaaggacacaagttaacactaccc 34710890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 18436410 - 18436288
Alignment:
Q  62 gaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaa 161  Q
    |||| ||| ||||| |||||||||| ||  || ||||||||||||||| |||| ||| |   | |||||||| |||||| ||||| ||||||||||||||    
T  18436410 gaatgtgtacattaaatttaatctttaatgttttaatgaattgaatgctcaaagtttaaagaaatatttctttttttggatttcttaacatgtgccctaa 18436311  T
Q  162 gggcacaagttagcactacccat 184  Q
    |||||||||||| ||||||||||    
T  18436310 gggcacaagttaacactacccat 18436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 51050153 - 51050028
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||| | ||||||||||| | || ||| |||| |||| ||||||||| |||||||||| |||||||| |||| ||||||| ||||||||    
T  51050153 ttattggaatgtgtgtaatacatttaatcgttaattttttaatcaattaaatgcacaatattttagagaatatttctttttttaggtttcttaacatgtg 51050054  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    ||| |||| ||||||||| || |||||    
T  51050053 ccc-aaggacacaagttaacattaccc 51050028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 42549270 - 42549167
Alignment:
Q  77 atttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    ||||| |||| ||||||  |||| |||||||| | ||||||||||||| ||||||||||||| ||||||| ||||| |||||||| ||||||| ||| ||    
T  42549270 atttagtctttaacttttaaatgcattgaatgtataaaattttagagaatatttcttcttttaggtttcttaacatatgccctaaaggcacaaattaaca 42549171  T
Q  177 ctac 180  Q
    ||||    
T  42549170 ctac 42549167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 39275876 - 39275966
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttct 146  Q
    |||||| ||| ||||||||  |||||||||| ||||||  ||||  ||||||||| ||||||||||||| |||||||||||||||||||||    
T  39275876 ttattgaaatgtgtgcattttatttaatctttaacttttaaatgctttgaatgcataaaattttagagaatatttcttcttttgggtttct 39275966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 31262416 - 31262531
Alignment:
Q  58 attggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgcc 157  Q
    |||| ||| ||| ||||||||||||| || | |||| |||||| ||||||| ||||||||| | | | |||||||| |||| ||||||| ||||||||||    
T  31262416 attgtaatgtgtacattacatttaatatttagctttttaatgagttgaatgtacaaaatttgataaaatatttctttttttaggtttcttaacatgtgcc 31262515  T
Q  158 ctaagggcacaagtta 173  Q
    || |||||||| ||||    
T  31262516 ctgagggcacaggtta 31262531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 33828175 - 33828101
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtattt 130  Q
    |||||||||| |||| ||||||| ||||||| |||||| |||| ||||||||||| ||||||||||||| |||||    
T  33828175 ttattggaatgtgtgtattacatctaatctttaactttttaataaattgaatgcataaaattttagagaatattt 33828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 33839790 - 33839864
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtattt 130  Q
    |||||||||| |||| ||||||| ||||||| |||||| |||| ||||||||||| ||||||||||||| |||||    
T  33839790 ttattggaatgtgtgtattacatctaatctttaactttttaataaattgaatgcataaaattttagagaatattt 33839864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 18023886 - 18023781
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| |||||||||| | || |||||||| |||||| |||||||||||||| | |||||||| || | |||||||||| |||  ||||| ||||||||    
T  18023886 ttattgaaatatgtgcactgcaattaatctttaactttttaatgaattgaatgaataaaatttttgaaaatatttcttctcttgaatttcttaacatgtg 18023787  T
Q  156 ccctaa 161  Q
    | ||||    
T  18023786 ctctaa 18023781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 36313612 - 36313713
Alignment:
Q  81 aatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactac 180  Q
    |||||| |||||| ||||||||||||| |||||||||||| | | ||||||||||||||  ||||| ||||||| |  |||| | ||||||||||| |||    
T  36313612 aatctttaactttttaatgaattgaattcacaaaattttaaaaaatatttcttcttttgactttcttaacatgtactttaagagtacaagttagcattac 36313711  T
Q  181 cc 182  Q
    ||    
T  36313712 cc 36313713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 15401706 - 15401831
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||||||||  || ||||| ||||||| || ||  || |||| ||||||||||||||| ||| ||||| || ||||| |||| | ||||| |||||||||    
T  15401706 tattggaatgcgtacattaaatttaatatttaatgttttaatcaattgaatgcacaaagtttaagagaataattctttttttagatttcttaacatgtgc 15401805  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
    ||||| | |||||||||  |||||||    
T  15401806 cctaaagacacaagttaatactaccc 15401831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 39412492 - 39412436
Alignment:
Q  126 tatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactaccc 182  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||| || |||||    
T  39412492 tatttcttcttttgagtttcttaacatgtgccctaagagcacaagttaacattaccc 39412436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 15279106 - 15279008
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaatt-ttagagagtatttcttcttttgggtttctcaacatg 153  Q
    ||||| |||| |||||||| |||||||| || |||||| |||| |||||||||||||||||| | | | | |||||||||| ||| |||||| ||||||    
T  15279106 ttattagaatgtgtgcattgcatttaatatttaactttttaataaattgaatgcacaaaattataaaaaaatatttcttctcttgagtttcttaacatg 15279008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 8547346 - 8547466
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||||||  || ||||  ||||||| || || |||||||| |||||||||||||||| || || ||  |||||| |||||||||| || |||| |||    
T  8547346 ttattggaatccgtacattgaatttaatttttaaatttgtaataaattgaatgcacaaaacttaagtgaaaatttctacttttgggttccttaacacgtg 8547445  T
Q  156 ccctaagggcacaagttagca 176  Q
    || | ||| |||||| |||||    
T  8547446 cctttaggacacaagctagca 8547466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 8612585 - 8612705
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||||||  || ||||  ||||||| || || |||||||| |||||||||||||||| || || ||  |||||| |||||||||| || |||| |||    
T  8612585 ttattggaatccgtacattgaatttaatttttaaatttgtaataaattgaatgcacaaaacttaagtgaaaatttctacttttgggttccttaacacgtg 8612684  T
Q  156 ccctaagggcacaagttagca 176  Q
    || | ||| |||||| |||||    
T  8612685 cctttaggacacaagctagca 8612705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 44966126 - 44966000
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  44966126 ttattggaatgtgtgcattgcatttaatctttaactttttaatgaattgaatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtg 44966027  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    ||||||| |||||||||| ||||||||    
T  44966026 ccctaagagcacaagttaacactaccc 44966000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 41542822 - 41542733
Alignment:
Q  95 taatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactacccat 184  Q
    |||| |||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||    
T  41542822 taatcaattaaatgcacaaaattttagagaatatttcttcttttgagtttcttaacatgtgccttaagggcacaagttaacactacccat 41542733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 44022253 - 44022139
Alignment:
Q  68 gtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcac 167  Q
    |||| ||||||||||| || |||||| |||| |||||||||||||||||||||| || |||| |||||||| ||||||| | |||||||| |||||||||    
T  44022253 gtgccttacatttaatttttaactttttaattaattgaatgcacaaaattttagggaatattacttcttttaggtttcttatcatgtgccataagggcac 44022154  T
Q  168 aagttagcactaccc 182  Q
    || ||| || |||||    
T  44022153 aaattaacattaccc 44022139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 6461326 - 6461219
Alignment:
Q  75 acatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttag 174  Q
    |||||||||||| |||||| |||||||||||||| | |||||||| |||| |||||||||||||| |||| | |||||||| |||||  | ||||||||     
T  6461326 acatttaatctttaactttttaatgaattgaatgtataaaattttggagaatatttcttcttttgagttttttaacatgtgtcctaaaagtacaagttaa 6461227  T
Q  175 cactaccc 182  Q
    ||||||||    
T  6461226 cactaccc 6461219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 31663500 - 31663375
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| ||||||||| ||||||| || ||||||  |||||||||||||||||| |||||| ||| ||||| |||||||   ||||| ||||||||    
T  31663500 ttattggaatgtgtgcattatatttaatttt-aacttttgaatgaattgaatgcacaatattttaaagaatattttttcttttaaatttcttaacatgtg 31663402  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
     ||| | ||||||||||| ||||||||    
T  31663401 tccttaaggcacaagttaacactaccc 31663375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 34929297 - 34929172
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||||||||  |||||||| |||||||||| ||  || |||||||||||||||||||| ||| ||  | |||| ||| || ||| ||||| |||||||||    
T  34929297 tattggaatgcgtgcattaaatttaatctttaatgttttaatgaattgaatgcacaaagtttaaggaaatattcctttttctggatttcttaacatgtgc 34929198  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
    |||||||||| |||||| ||||||||    
T  34929197 cctaagggcataagttaacactaccc 34929172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 40711275 - 40711152
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| ||| |||| |||  ||||||| || |||||| ||||||||| |||||||||||||||| | | |||||||||||||| |||||| ||||||||    
T  40711275 ttattgaaatgtgtgtattgtatttaatttttaactttttaatgaattaaatgcacaaaattttatacaatatttcttcttttgtgtttcttaacatgtg 40711176  T
Q  156 ccctaagggcacaagttagcacta 179  Q
    ||| ||  ||||| |||| |||||    
T  40711175 cccaaaaagcacatgttaacacta 40711152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 12972773 - 12972691
Alignment:
Q  94 gtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    ||||| ||||||||||||||||||| ||||| || |||| ||||||| || || ||||||||||||||| |||||||||||||    
T  12972773 gtaataaattgaatgcacaaaatttcagagaataattctacttttggattgcttaacatgtgccctaagagcacaagttagca 12972691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 2080587 - 2080510
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcac 177  Q
    ||||||||||||||||||| ||||| ||||| | ||||||||||||| |||||||||||| || |||||||| |||||    
T  2080587 aattgaatgcacaaaatttaagagaatatttttgcttttgggtttcttaacatgtgcccttagcgcacaagtcagcac 2080510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 27269202 - 27269136
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttaga 122  Q
    |||||| ||| |||||||| ||||||| ||| |||||| |||||||||  |||||||||||||||||    
T  27269202 ttattgaaatgtgtgcatttcatttaacctttaactttttaatgaattagatgcacaaaattttaga 27269136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 31742800 - 31742702
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgt 154  Q
    |||||||||||| || |||| ||||||| || ||||||  ||||||||||||| ||||||||| | | | ||||| ||||||||  ||||| |||||||    
T  31742800 ttattggaatatatgtattatatttaatgtttaacttttgaatgaattgaatgtacaaaatttcaaaaaatattttttcttttgaatttcttaacatgt 31742702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 17696104 - 17696021
Alignment:
Q  95 taatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactac 180  Q
    |||||||||||||||||||| ||| || || |||||||| |||||| ||||| |||||||||| |||  |||||||||| ||||||    
T  17696104 taatgaattgaatgcacaaagtttaagggaatatttctt-ttttggatttcttaacatgtgccttaa-agcacaagttaacactac 17696021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 25220778 - 25220886
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| ||| |||| ||| | ||||||||| || ||| |||| |||| ||| || ||||||||||| | | ||||||||||||  ||| | ||||||||    
T  25220778 ttattgaaatttgtgtattgcttttaatctttaattttttaatcaattaaattcataaaattttagaaaatgtttcttcttttgaattttttaacatgtg 25220877  T
Q  156 ccctaaggg 164  Q
    |||||||||    
T  25220878 ccctaaggg 25220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 25396881 - 25397008
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||||||||  || ||||| |||||||||| ||  || |||||||||||||| ||||| ||| ||| | | |||||| |||||| ||| | ||||||||     
T  25396881 tattggaatgcgtacattaaatttaatctttaatgttttaatgaattgaatgtacaaagtttaagaaaatctttctttttttggattttttaacatgtgt 25396980  T
Q  157 cctaagggcacaagttagcactacccat 184  Q
    | ||| |||| | |||| ||||||||||    
T  25396981 cttaaaggcataggttaacactacccat 25397008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 16721595 - 16721669
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtattt 130  Q
    |||||||||| |||  |||| ||||||| || || |||||||| |||| |||||||||||||| ||||| |||||    
T  16721595 ttattggaatgtgttgattaaatttaatttttaagtttgtaataaattaaatgcacaaaatttgagagaatattt 16721669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 20203600 - 20203714
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||||||||  || ||||| |||||||||| ||  || ||||||||||||| || ||| ||| | | | |||||||| |||||| ||||| |||| |||     
T  20203600 tattggaatgcgtacattaaatttaatctttaatgttttaatgaattgaatacagaaagtttaaaataatatttctttttttggatttcttaacacgtgt 20203699  T
Q  157 cctaagggcacaagt 171  Q
    |||||| ||||||||    
T  20203700 cctaagagcacaagt 20203714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 30545592 - 30545634
Alignment:
Q  134 cttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||    
T  30545592 cttttaggtttcttaacatgtgccctaagggcataagttagca 30545634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 8996623 - 8996570
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaatttta 120  Q
    |||||||| |||||||| || | |||| |||||| |||||||||||||||||||    
T  8996623 tgtgcattccatttaatgtttagctttttaatgagttgaatgcacaaaatttta 8996570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 55323045 - 55322919
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| | | |||||||||||| |||||||| ||||||||    
T  55323045 ttattggaatttgtgcattacatttaatctttaactttttaatgaattgaatgcacaaaattttaaaaaatatttcttctttggggtttcttaacatgtg 55322946  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    ||||||||||||||||| || ||||||    
T  55322945 ccctaagggcacaagttggctctaccc 55322919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 47388500 - 47388626
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| ||| |||| ||||||||||||||| ||| || |||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  47388500 ttattgaaatgtgtgtattacatttaatctttaaccttttaatgaattgaatgtacaaaattttagagaatatttcttcttttggatttcttaacatgtg 47388599  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    |||||||||||||||||| ||||||||    
T  47388600 ccctaagggcacaagttaacactaccc 47388626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 50328475 - 50328350
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||| ||| |||||||| |||||||||    
T  50328475 tattggaatgtgtgcattacatttaatctttaactttttaatgaattggatgcacaaaattttagagaatatttcttttttggggtttcttaacatgtgc 50328376  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
    ||| ||||||||| ||| ||||||||    
T  50328375 ccttagggcacaaattaacactaccc 50328350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 53133507 - 53133631
Alignment:
Q  58 attggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgcc 157  Q
    ||||||||||||||||||||||||||||| || ||| |||||| |||||||| |||||||||| | | ||||||||||||| ||||||| ||||||||||    
T  53133507 attggaatatgtgcattacatttaatctttaaatttttaatgagttgaatgcgcaaaattttataaaatatttcttcttttaggtttcttaacatgtgcc 53133606  T
Q  158 ctaagggcacaagttagcactaccc 182  Q
    |||||||||||||||| ||||||||    
T  53133607 ctaagggcacaagttaacactaccc 53133631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 26740796 - 26740922
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||| | ||||||    
T  26740796 ttattggaatatgtgtattacatgtaatctttaactttttaatgaattgaatgcacaaaattttagagaatatttcttcttttgaatttcttagcatgtg 26740895  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    || |||| |||||| ||| ||||||||    
T  26740896 ccttaagagcacaaattaacactaccc 26740922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 49250127 - 49250017
Alignment:
Q  72 attacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagt 171  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||  || ||||| ||||||||| ||||| ||||| ||||||||||||||||||    
T  49250127 attacatttaatctttaactttttaatgaattgaatgcacaaaattttaatgaatatttattcttttggatttcttaacatttgccctaagggcacaagt 49250028  T
Q  172 tagcactaccc 182  Q
    || ||||||||    
T  49250027 taacactaccc 49250017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 17340354 - 17340481
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||||||||||||||||||| |||||| |||| |||||| |||| ||||||||||||| |  || ||||||| | ||||| ||||||||    
T  17340354 ttattggaatgtgtgcattacatttaatctttaactttttaataaattgattgcataaaattttagagaatgctttttcttttagatttcttaacatgtg 17340453  T
Q  156 ccctaagggcacaagttagcactaccca 183  Q
    ||||||| || ||||||| |||||||||    
T  17340454 ccctaagagcccaagttaacactaccca 17340481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 46393180 - 46393306
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||| |||||||| ||||| || || | |||| |||||||||||||||||| ||||||||||| ||||| ||||||||| ||||| ||||||||    
T  46393180 ttattagaatgtgtgcatttcatttcatttttacctttttaatgaattgaatgcacacaattttagagaatatttattcttttggttttcttaacatgtg 46393279  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    | |||||| ||||| ||| ||||||||    
T  46393280 ctctaaggacacaaattaacactaccc 46393306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 4442258 - 4442382
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| ||| |||||||| ||||||| ||| |||||| || ||||||||||||| | ||||||||||| ||||||||||||| | ||||| ||||| ||    
T  4442258 ttattgaaatgtgtgcatttcatttaaactttaactttttagtgaattgaatgcaaataattttagagaatatttcttctttttgttttcttaacatatg 4442357  T
Q  156 ccctaagggcacaagttagcactac 180  Q
     | ||||||||||||||| ||||||    
T  4442358 tcgtaagggcacaagttaacactac 4442382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 37056226 - 37056341
Alignment:
Q  68 gtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcac 167  Q
    |||||||| |||||||||| |||||| ||||||||||||| ||||||| |||||||| || ||||||||||  |||| | | ||||||| ||||||| |     
T  37056226 gtgcattaaatttaatctttaactttttaatgaattgaatacacaaaactttagagaataattcttcttttaagttttttatcatgtgcgctaagggtaa 37056325  T
Q  168 aagttagcactaccca 183  Q
    ||||||||||||||||    
T  37056326 aagttagcactaccca 37056341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 31204413 - 31204310
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||  |||| ||||||||||||||| |||||| |||| ||||||||||||| ||||| | ||| ||||  ||||||||||||||| ||||||||    
T  31204413 ttattggaaggtgtgtattacatttaatctttaactttttaataaattgaatgcacacaatttaaaagaatattatttcttttgggtttcttaacatgtg 31204314  T
Q  156 ccct 159  Q
    ||||    
T  31204313 ccct 31204310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 12800049 - 12799923
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| ||||| ||  ||| ||| || |||||| |||| | || |||||||||||||||||| | | |||||||||||  |||||| ||||||||    
T  12800049 ttattggaatgtgtgctttgtattcaatatttaactttttaatcatttaaatgcacaaaattttagaaattgtttcttcttttaagtttcttaacatgtg 12799950  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    ||||||||||| |||||| ||||||||    
T  12799949 ccctaagggcataagttaacactaccc 12799923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 41236109 - 41235995
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggca 166  Q
    |||||||||||||||||||| |||||| |||| |||| |||||||||||||||| | | ||||||||||||| | ||| | |||||||| | ||| | ||    
T  41236109 tgtgcattacatttaatctttaactttttaataaattaaatgcacaaaattttataaaatatttcttcttttagattttttaacatgtgtcttaaagaca 41236010  T
Q  167 caagttagcactacc 181  Q
    |||||||||| ||||    
T  41236009 caagttagcattacc 41235995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 45891339 - 45891425
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatg 153  Q
    |||||||||||||||||||| |||||| ||||||||| | |||||||||||||||||| ||| |||||||||  |||||| ||||||    
T  45891339 tgtgcattacatttaatctttaactttttaatgaattaattgcacaaaattttagagaatatatcttcttttaagtttcttaacatg 45891425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 21894755 - 21894872
Alignment:
Q  59 ttggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccc 158  Q
    ||||||| ||||||||  ||||||| ||  | |||||||| ||| |||||||||||| || ||||| ||||||| |  ||||||| || ||||||||||     
T  21894755 ttggaatgtgtgcattgaatttaatttttgaatttgtaataaatagaatgcacaaaacttgagagaatatttctaccattgggttccttaacatgtgccg 21894854  T
Q  159 taagggcacaagttagca 176  Q
    ||||||||||||||||||    
T  21894855 taagggcacaagttagca 21894872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 42674058 - 42674155
Alignment:
Q  58 attggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||| | ||||||| |||||||||| || ||| |||||| ||||||||||||||||||| | | |||||||||||||  |||||| ||||||||    
T  42674058 attggaatgtatgcattatatttaatctttaattttttaatgagttgaatgcacaaaattttataaaatatttcttcttttaagtttcttaacatgtg 42674155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 34119004 - 34118901
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| |||||||||||| |||| ||| || |||||| |||| | || |||||||||||||||| ||| |||||  |||||| ||||||| ||||||||    
T  34119004 ttattgaaatatgtgcattgcattcaatatttaactttttaatcatttaaatgcacaaaattttatagaatatttactcttttaggtttcttaacatgtg 34118905  T
Q  156 ccct 159  Q
    ||||    
T  34118904 ccct 34118901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 8171080 - 8171198
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttc-aactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgt 154  Q
    |||||| ||| ||||||||| ||||||||||  |||||| |||| |||||||||||||||||||||  || |||||||||||||| |||| | ||||| |    
T  8171080 ttattgaaatgtgtgcattatatttaatcttttaactttttaataaattgaatgcacaaaattttaatgaatatttcttcttttgagttttttaacatat 8171179  T
Q  155 gccctaagggcacaagtta 173  Q
    | | ||||| || ||||||    
T  8171180 gtcttaaggacaaaagtta 8171198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 48622337 - 48622251
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatg 153  Q
    |||||||| |||| ||| || |||||| |||| | || |||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  48622337 tgtgcattgcattcaatatttaactttttaatcatttaaatgcacaaaattttagagaatatttcttcttttaggtttcttaacatg 48622251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 16067876 - 16067812
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaatttta 120  Q
    |||||| ||| |||| ||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  16067876 ttattgaaatgtgtgtattacatttaatctttaactttttaatgaattgaatacacaaaatttta 16067812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 24453190 - 24453266
Alignment:
Q  55 gttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttc 131  Q
    ||||||| ||||||||||||| |||||||||| ||||||  ||||| ||||||||| ||||||| ||||| ||||||    
T  24453190 gttattgaaatatgtgcattaaatttaatctttaacttttcaatgatttgaatgcataaaatttaagagaatatttc 24453266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 45088285 - 45088201
Alignment:
Q  96 aatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactac 180  Q
    |||||||| |||||| |||||||||||||   ||| ||||||||||||||| ||||||| |||||| |||| |||||| ||||||    
T  45088285 aatgaattaaatgcataaaattttagagaaagttttttcttttgggtttcttaacatgttccctaaaggcataagttaacactac 45088201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 34291272 - 34291399
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| || ||||| |||||||| || ||| || |||| | || |||||| ||| |||| || | | ||| || |||| ||||| | ||||||||    
T  34291272 ttattggaatgtgcgcattgcatttaatatttaaccttttaataatttaaatgcataaattttttgaaaatgtttttttttttaggtttttaaacatgtg 34291371  T
Q  156 ccctaagggcacaagttagcactaccca 183  Q
    |||||||||||||||||| |||||||||    
T  34291372 ccctaagggcacaagttaacactaccca 34291399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 2554150 - 2554069
Alignment:
Q  95 taatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    |||| |||||||||||||| || | ||| |  |||||| |||||||||| || ||||||||||| |||||||||||||||||    
T  2554150 taattaattgaatgcacaacatgtaagaaaaaatttctacttttgggttgcttaacatgtgcccgaagggcacaagttagca 2554069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 31217008 - 31216952
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcaca 112  Q
    |||||||||  |||| ||||||||||||||| |||||| ||||||||||||||||||    
T  31217008 ttattggaaggtgtgtattacatttaatctttaactttttaatgaattgaatgcaca 31216952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 33176507 - 33176589
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttctttt 138  Q
    ||||| |||||||||||||||||||||| || ||||||  ||| |||| ||| |||||||||||| | | ||||| |||||||    
T  33176507 ttattagaatatgtgcattacatttaatatttaacttttaaataaatttaatacacaaaattttaaaaaatatttattctttt 33176589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 45219957 - 45219917
Alignment:
Q  142 tttctcaacatgtgccctaagggcacaagttagcactaccc 182  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  45219957 tttcttaacatgtgccctaagggcacaagttaacactaccc 45219917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 12798264 - 12798205
Alignment:
Q  95 taatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgt 154  Q
    |||||||||||||| ||||||| ||||| | |||||||| |||| ||||||| |||||||    
T  12798264 taatgaattgaatgtacaaaatcttagaaaatatttcttgttttaggtttcttaacatgt 12798205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 14593700 - 14593575
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| ||| |||| ||| |||| ||| || || ||| |||| |||| |||||| ||||||||| | | ||||||||||||| | ||| | || ||| |    
T  14593700 ttattgcaatgtgtgtattgcattaaatgtttaaatttttaatcaattaaatgcataaaattttaaaaaatatttcttcttttagattttttaatatggg 14593601  T
Q  156 ccctaagggcacaagttagcactacc 181  Q
    |||||| |||| |||||| |||||||    
T  14593600 ccctaacggcataagttaacactacc 14593575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 22019516 - 22019569
Alignment:
Q  139 gggtttctcaacatgtgccctaagggcacaagttagcactacccatgtttttat 192  Q
    |||||||| |||||||||||| ||||||||||||| ||  |||||| |||||||    
T  22019516 gggtttcttaacatgtgcccttagggcacaagttaacatgacccatatttttat 22019569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 36827893 - 36827786
Alignment:
Q  75 acatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttag 174  Q
    ||||||||| || |||||  |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||     
T  36827893 acatttaatttttaacttattaatgaattgaatgcacaaaattttagagaatatttcttcttttaggtttcttaacatgtgccctaagggcacaagttaa 36827794  T
Q  175 cactaccc 182  Q
    ||||||||    
T  36827793 cactaccc 36827786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 17354396 - 17354522
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| || ||||  ||||||||||| |||||| |||| |||| |||||| ||||||||| ||| ||||||||||||||||||||| ||||||||    
T  17354396 ttattggaatgtgggcatatcatttaatctttaactttttaatcaattaaatgcataaaattttatagaatatttcttcttttgggtttcttaacatgtg 17354495  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    |||||||||||||||||| ||||||||    
T  17354496 ccctaagggcacaagttaacactaccc 17354522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 42306342 - 42306248
Alignment:
Q  88 aactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactaccc 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||    
T  42306342 aactttttaatgaattgaatgcacaaaattttagagagtatttcttcttttgagtttcttaacatgtgctctaagggcacaagttaacactaccc 42306248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 37828374 - 37828500
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttc-aactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgt 154  Q
    ||||||||||  ||| |||| ||||||||||  |||||| |||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||| |    
T  37828374 ttattggaatgcgtgtattaaatttaatcttttaactttttaataaattgaatgcacaaaatttaagagaatatttcttcttttaggtttcttaacatat 37828473  T
Q  155 gccctaagggcacaagttagcactacc 181  Q
    |||| ||||||||||||||||| ||||    
T  37828474 gccccaagggcacaagttagcattacc 37828500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 48634023 - 48633897
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| ||| ||||   |||| |||| |||||| |||||||||||||||| |||||||||||||   ||| ||||||| ||||||| ||||||||    
T  48634023 ttattggaatgtgtacattgtctttagtctttaactttttaatgaattgaatgcataaaattttagagaaatttttttcttttaggtttcttaacatgtg 48633924  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    |||||||||||||||||| ||||||||    
T  48633923 ccctaagggcacaagttaacactaccc 48633897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 40019862 - 40019735
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| ||| |||||||| |||||||| || |||||| |||| | || ||| ||||||| |||||||| |  |||||||||| ||||||| ||||||||    
T  40019862 ttattgaaatgtgtgcattgcatttaatatttaactttttaatcatttaaatacacaaaagtttagagaatgcttcttcttttaggtttcttaacatgtg 40019763  T
Q  156 ccctaagggcacaagttagcactaccca 183  Q
    || ||| ||||||||||| |||||||||    
T  40019762 ccataaaggcacaagttaacactaccca 40019735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 3767233 - 3767108
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||||| ||||||||||||||| || |||||| |||| |||| ||| ||   ||||||||| | ||||| ||||||| ||||||| ||||||||    
T  3767233 ttatttgaatatatgcattacatttaatatttaactttttaataaattaaatacatcgaattttagaaaatatttattcttttaggtttcttaacatgtg 3767134  T
Q  156 ccctaagggcacaagttagcactacc 181  Q
    || ||| ||||||| |||||||||||    
T  3767133 ccataaaggcacaacttagcactacc 3767108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 23358497 - 23358605
Alignment:
Q  72 attacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagt 171  Q
    |||| |||||||||| ||| || | |||||||||||||||| ||||||| | | |||||||||||||  |||| | |||||||| |||||||||||||||    
T  23358497 attatatttaatctttaaccttttcatgaattgaatgcacacaattttaaaaaatatttcttcttttaagttttttaacatgtgtcctaagggcacaagt 23358596  T
Q  172 tagcactac 180  Q
    || ||||||    
T  23358597 taacactac 23358605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 25971472 - 25971593
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||||||   ||||||||||||||| || || ||| ||||||||||||||||||||||||||| || |||||||| |||| | ||||| ||||||      
T  25971472 ttattggaatgcatgcattacatttaatatttaattttttaatgaattgaatgcacaaaattttagtgaatatttctt-tttttgatttcttaacatg-- 25971568  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
      |||||| ||||||||| ||||||||    
T  25971569 --ctaaggacacaagttaacactaccc 25971593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 31289566 - 31289441
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||||||||  |||||| | |||||||||| ||  || |||||||||||||||||||| ||| ||| | |||||||| |||||  ||||| |||||||||    
T  31289566 tattggaatgcgtgcataaaatttaatctttaatgttttaatgaattgaatgcacaaagtttaagataatatttctttttttgaatttcttaacatgtgc 31289467  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
      ||| ||||||||||| ||||||||    
T  31289466 tataaaggcacaagttaacactaccc 31289441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 20009739 - 20009652
Alignment:
Q  71 cattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccc 158  Q
    |||||||||||||||  |||||| | || ||||||||||||||||||||||| | ||||||||||||||  ||| | |||||||||||    
T  20009739 cattacatttaatctgtaacttttttataaattgaatgcacaaaattttagaaaatatttcttcttttgaattttttaacatgtgccc 20009652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 48046983 - 48046895
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttct 146  Q
    |||||||||| ||||||||||||||||| || | | || ||||||||| |||||||  |||||||||||  ||||||||||||||||||||    
T  48046983 ttattggaatgtgtgcattacatttaatatttagccttttaatgaattaaatgcac--aattttagagaaaatttcttcttttgggtttct 48046895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 48339745 - 48339802
Alignment:
Q  66 atgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagag 123  Q
    ||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||||    
T  48339745 atgtgcattacatttaatctttaattttttaatgaattgaatgaacaaaattttagag 48339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 23363779 - 23363903
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||||||  ||| ||||||||| ||||| ||| || |||| ||||||||| ||||||||||| | | ||||  || ||||  |||||| ||||||||    
T  23363779 ttattggaatgcgtgtattacattttatctttaaccttttaataaattgaatgtacaaaattttaaaaaatatt--ttttttttagtttcttaacatgtg 23363876  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
     |||||||| |||||||| ||||||||    
T  23363877 tcctaagggtacaagttaacactaccc 23363903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 676267 - 676385
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttct---caacatg 153  Q
    |||||||||  || ||||| |||||||||| ||  || |||||||||||||||||||||||| || || |||||||| |||||| |||||   || ||||    
T  676267 tattggaatgcgtacattaaatttaatctttaatgttttaatgaattgaatgcacaaaatttaagggaatatttctt-ttttggatttcttaacatcatg 676365  T
Q  154 tgccctaagggcacaagtta 173  Q
    ||  ||||||||||||||||    
T  676366 tgttctaagggcacaagtta 676385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 39983188 - 39983241
Alignment:
Q  120 agagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagtta 173  Q
    |||||||||||||| |||||||||| | |||||||||||| |||||||||||||    
T  39983188 agagagtatttcttgttttgggttttttaacatgtgcccttagggcacaagtta 39983241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 42121404 - 42121477
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagtta 173  Q
    ||||||||| ||||||||| ||||| | ||||| |||||||||| || |||||||||||| |||||| ||||||    
T  42121404 aattgaatgtacaaaatttaagagaatgtttctacttttgggttgcttaacatgtgcccttagggcataagtta 42121477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 43251976 - 43251860
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||| ||||  |||||||||||||| || ||| |||| |||| |||||| ||||||||| | | |||||||| ||||  |||||| ||||||||    
T  43251976 ttattagaatgtgtgttttacatttaatctttaattttttaatcaattaaatgcataaaattttaaataatatttctt-ttttaagtttcttaacatgtg 43251878  T
Q  156 ccctaagggcacaagtta 173  Q
      ||||||||||||||||    
T  43251877 ttctaagggcacaagtta 43251860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 48723307 - 48723231
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    ||||||||| ||||||||| ||| | | |||||  ||||||||| || |||||||||| ||||||||||||||||||    
T  48723307 aattgaatgtacaaaatttaagataatgtttctatttttgggttgcttaacatgtgccataagggcacaagttagca 48723231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 3622276 - 3622350
Alignment:
Q  95 taatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaa 169  Q
    |||||||||||||||||||||||||| | | |||||||||||||   ||||| ||||| ||| |||||| |||||    
T  3622276 taatgaattgaatgcacaaaattttaaaaaatatttcttcttttaaatttcttaacatatgctctaaggacacaa 3622350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 11885528 - 11885442
Alignment:
Q  58 attggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggttt 144  Q
    |||||||| |||  ||||||||||||||| |  ||| |||||| ||||||| ||||||||||| | | |||||||||||||| ||||    
T  11885528 attggaatgtgtaaattacatttaatctttagttttttaatgagttgaatgtacaaaattttataaaatatttcttcttttgagttt 11885442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 48030154 - 48030072
Alignment:
Q  92 ttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    ||||||| ||||||||||| ||  ||| ||||| | ||||| ||||||||||||| || ||||||||| ||||||||| ||||||    
T  48030154 ttgtaattaattgaatgcataa--tttaagagaatgtttctacttttgggtttcttaaaatgtgcccttagggcacaatttagca 48030072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 25594593 - 25594654
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattt 118  Q
    |||| |||| ||||||||| |||||||||| ||  || |||| |||||||||||||||||||    
T  25594593 tattagaatgtgtgcattaaatttaatctttaatattttaataaattgaatgcacaaaattt 25594654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 32903089 - 32903142
Alignment:
Q  126 tatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcacta 179  Q
    ||||||||||||||| ||||| |||||||   |||||||||||||||| |||||    
T  32903089 tatttcttcttttggttttcttaacatgtattctaagggcacaagttaacacta 32903142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 25983087 - 25983213
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||||||||||||||| ||||||||||| ||||||  ||  ||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||    
T  25983087 ttattggaatatgtgcattgcatttaatctttaacttttcaaaaaattgaatgcacaaaattttagagaatatttattcttttaggtttcttaacatgtg 25983186  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
     |||||| |||||||||| ||||||||    
T  25983187 tcctaagagcacaagttaacactaccc 25983213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 19961578 - 19961708
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaac--atg 153  Q
    |||||||||| |||| ||| ||||||||||| || ||| |||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| |||  |||    
T  19961578 ttattggaatgtgtgtatttcatttaatctttaattttttaataaattgaatgcacaaaattttaaagaatatttcttcttttggatttcttaacatatg 19961677  T
Q  154 tgccctaagggcacaagttagcactacccat 184  Q
    |||||||||||||||||||| ||||||||||    
T  19961678 tgccctaagggcacaagttaacactacccat 19961708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 36527451 - 36527577
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||| | |||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||    
T  36527451 ttattggagtgtgtgcattgcatttaatctttaacttt-taataaattgaatgcacaaaattttagagaatatttattcttttggatttcttaacatgtg 36527549  T
Q  156 ccctaagggcacaagttagcactaccca 183  Q
     | ||||||||||||||| |||||||||    
T  36527550 tcttaagggcacaagttaacactaccca 36527577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 14576017 - 14575908
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggca 166  Q
    ||||||||||||| ||| || |||||| |||||||||||||||||||||||||||  | ||||| |||||||| |||||| ||||||| || ||||||||    
T  14576017 tgtgcattacattgaatatttaactttttaatgaattgaatgcacaaaattttagtaaatattttttcttttgagtttcttaacatgttccgtaagggca 14575918  T
Q  167 caagttagca 176  Q
    ||||||||||    
T  14575917 caagttagca 14575908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 40298359 - 40298236
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||| ||| |||||||||||||||| ||| || |||||||||||||||||||||||||||| | ||||| |||||||   ||||| ||||||||    
T  40298359 ttattagaatgtgtacattacatttaatctttaacattttaatgaattgaatgcacaaaattttagaaaatatttattcttttaaatttcttaacatgtg 40298260  T
Q  156 ccctaagggcacaagttagcacta 179  Q
      |||||||||||||||| |||||    
T  40298259 ttctaagggcacaagttaacacta 40298236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 7406310 - 7406197
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggca 166  Q
    |||||||||||||||||||| | |||| |||||| ||||||||| ||||||||| | | |||||||||||||  |||||| |||||||| ||||||||||    
T  7406310 tgtgcattacatttaatctttagctttttaatgagttgaatgcataaaattttataaaatatttcttcttttatgtttcttaacatgtgtcctaagggca 7406211  T
Q  167 caagttagcactac 180  Q
    ||| ||| ||||||    
T  7406210 caaattaacactac 7406197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 8234029 - 8234145
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||| | ||||||||| |||||||||| ||||||   |||| || |||||||||||||| ||||| |||||||||||||| |||||| |||||||     
T  8234029 ttattggattgtgtgcattaaatttaatctttaacttttcgatgatttaaatgcacaaaatttaagagaatatttcttcttttgagtttcttaacatgt- 8234127  T
Q  156 ccctaagggcacaagtta 173  Q
     ||| |||||||||||||    
T  8234128 accttagggcacaagtta 8234145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 28574918 - 28574793
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||||||||| |||||||| | ||||| || ||  || ||||||||| |||||||||| ||| ||| | |||||||| |||||| ||| | |||||||||    
T  28574918 tattggaatacgtgcattaaacttaatatttaatgttttaatgaattaaatgcacaaagtttaagaaaatatttctttttttggattttttaacatgtgc 28574819  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
    ||||||| ||||||||| ||||||||    
T  28574818 cctaaggacacaagttaacactaccc 28574793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 1352828 - 1352924
Alignment:
Q  77 atttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagtta 173  Q
    |||||||||| |||||| ||||||||||||||||||| |||| ||||| ||||| ||||||| | ||||| |||||||| | |||| ||||||||||    
T  1352828 atttaatctttaactttttaatgaattgaatgcacaatatttaagagaatattttttctttttgatttcttaacatgtgtcataagagcacaagtta 1352924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 30685601 - 30685683
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttctttt 138  Q
    |||||| ||||||||||||||||||||| || |  ||| |||||||||||||||||||||||||| | | |||||||||||||    
T  30685601 ttattgaaatatgtgcattacatttaatttttagttttttaatgaattgaatgcacaaaattttataaaatatttcttctttt 30685683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 13951199 - 13951073
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||||| ||||||||| | ||||||||| |||||| |||| |||| |||||||||||||| ||  | |||||||| ||||  || ||| ||||| ||    
T  13951199 ttattggaaaatgtgcattgcgtttaatctttaactttttaatcaattaaatgcacaaaatttaaggaaatatttctttttttaagtgtcttaacatctg 13951100  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    ||||||||| | || ||| ||||||||    
T  13951099 ccctaagggtataaattaacactaccc 13951073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 29429689 - 29429767
Alignment:
Q  95 taatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagtta 173  Q
    |||| |||| |||||||||||||| ||| |  |||||| |||||||||| || ||||||||||||||||||||||||||    
T  29429689 taattaattaaatgcacaaaatttaagaaacaatttctacttttgggttgcttaacatgtgccctaagggcacaagtta 29429767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 25693695 - 25693804
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggca 166  Q
    ||||||||| |||||||||| |||||| |||| |||||||| |||||||||| | ||| ||| ||||||||| | ||||| |||||||  ||||| |  |    
T  25693695 tgtgcattaaatttaatctttaactttttaataaattgaattcacaaaatttaaaagaatatctcttcttttagttttcttaacatgtatcctaaagata 25693794  T
Q  167 caagttagca 176  Q
    ||||||||||    
T  25693795 caagttagca 25693804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 1860259 - 1860136
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattg-aatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgt 154  Q
    |||||| ||| |||||||||||||||||||   | ||| |||| ||||  |||||||||||||||||||| ||||| ||||||| | ||||| ||||| |    
T  1860259 ttattgaaatgtgtgcattacatttaatctctcattttttaatcaattttaatgcacaaaattttagagaatattttttctttt-gatttcttaacatat 1860161  T
Q  155 gccctaagggcacaagttagcacta 179  Q
    ||| |||| |||||||||| |||||    
T  1860160 gccttaagagcacaagttaacacta 1860136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 16843924 - 16844042
Alignment:
Q  59 ttggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttc-ttttgggtttctcaacatgtgcc 157  Q
    ||||||| ||||||||| ||||||| ||  | |||||||| ||   ||||||||||| || | ||| ||||||| | |||||||||||| | | ||||||    
T  16843924 ttggaatgtgtgcattaaatttaatttttgaatttgtaataaacaaaatgcacaaaacttgaaagaatatttctaccttttgggtttcttatcttgtgcc 16844023  T
Q  158 ctaagggcacaagttagca 176  Q
    |||||||||||||||||||    
T  16844024 ctaagggcacaagttagca 16844042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 3938431 - 3938516
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttggg 141  Q
    |||||||||| | |||||| |||||||| |  || ||| |||||||||||||||| ||||||||| | | ||||||||||||||||    
T  3938431 ttattggaatgtatgcattgcatttaatatctaattttttaatgaattgaatgcataaaattttaaaaaatatttcttcttttggg 3938516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 12289088 - 12289161
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagtta 173  Q
    |||||||| |||||||||  ||||| ||||||| ||||||| || || |||||||||||| |||||||||||||    
T  12289088 aattgaatacacaaaattcaagagaatatttctacttttggattgcttaacatgtgcccttagggcacaagtta 12289161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 42011298 - 42011404
Alignment:
Q  73 ttacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagtt 172  Q
    ||||||| ||| || |||||| || |||||| |||||||||||||||| ||| || |||||||||||| ||||| ||||  | || |||| |||||||||    
T  42011298 ttacattaaatttttaactttttagtgaattaaatgcacaaaattttatagaatacttcttcttttggatttcttaaca--taccttaagtgcacaagtt 42011395  T
Q  173 agcactacc 181  Q
    | |||||||    
T  42011396 aacactacc 42011404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 30721423 - 30721487
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaatttta 120  Q
    |||||| ||| ||||||||||||||||| || || ||| |||||| |||||||||||||||||||    
T  30721423 ttattgaaatgtgtgcattacatttaatttttaattttttaatgagttgaatgcacaaaatttta 30721487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 14310002 - 14309927
Alignment:
Q  58 attggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttctt 133  Q
    |||||||||||| |||| ||||||| ||| |||||| |||| |||| |||||||||||||||| | | ||||||||    
T  14310002 attggaatatgtacattgcatttaaactttaactttttaatcaattaaatgcacaaaattttaaaaaatatttctt 14309927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 15591745 - 15591690
Alignment:
Q  69 tgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagaga 124  Q
    |||||| | ||||||||| || ||| ||||||||||||||||||||||||||||||    
T  15591745 tgcattccttttaatctttaattttttaatgaattgaatgcacaaaattttagaga 15591690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 41816620 - 41816494
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttct-tcttttgggtttctcaacatgtg 155  Q
    ||||||||| ||| ||||| ||||||| || ||  || ||| ||||| |||||||||||||| || || || |||| | |||| | ||||| ||||||||    
T  41816620 tattggaatgtgtacattaaatttaatttttaatgtt-taaagaattaaatgcacaaaatttaagggaataattctattttttagatttcttaacatgtg 41816522  T
Q  156 ccctaagggcacaagttagcactaccca 183  Q
    |||||||||| ||||||| |||||||||    
T  41816521 ccctaagggcgcaagttaacactaccca 41816494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 3257519 - 3257407
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||||||||||||||| ||||||||||| |||||         ||||||||| ||||||||||| | |||   ||||||||| ||||| ||||||||    
T  3257519 ttattggaatatgtgcatttcatttaatctttaactt---------ttgaatgcataaaattttagaaaatat---ttcttttggatttcttaacatgtg 3257432  T
Q  156 ccctaagggcacaagttagcactac 180  Q
     ||||| | ||||||||| ||||||    
T  3257431 tcctaaagacacaagttaacactac 3257407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 4746095 - 4746173
Alignment:
Q  77 atttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||| |||||| |||||||||||||| |||| |||||| ||| |||||||| ||||| |||| | ||||||||    
T  4746095 atttattctttaactttttaatgaattgaatgtacaagattttatagaatatttctttttttgagtttattaacatgtg 4746173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 18334488 - 18334398
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttct 146  Q
    ||||| |||| |||||||| |||||||| || |||||| |||| | || |||||||||||||||||| | | ||| ||||||| |||||||    
T  18334488 ttatttgaatgtgtgcattgcatttaatattaaactttttaatcatttaaatgcacaaaattttagaaaatgtttattcttttaggtttct 18334398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 14622553 - 14622453
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||  |||||||| |||| ||| || |||||| |||| ||||| ||| ||||||||||||| | ||||| ||||||| |||| || ||||||||    
T  14622553 ttattggaaggtgtgcatttcattcaatatttaactttctaataaattggatgaacaaaattttagaaaatattttttctttt-ggttccttaacatgtg 14622455  T
Q  156 cc 157  Q
    ||    
T  14622454 cc 14622453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 4702573 - 4702656
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttc-aactttgtaatgaattgaatgcacaaaattttagagagtatttcttctttt 138  Q
    |||||||||| ||||| ||  ||||| ||||  ||||||  |||| ||||||||||||||||||||||||  ||||||||||||    
T  4702573 ttattggaatgtgtgctttttatttagtcttttaacttttaaatgcattgaatgcacaaaattttagagaacatttcttctttt 4702656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 4993334 - 4993209
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||| ||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||   ||||| |||||||||    
T  4993334 tatttgaatatgtgtattgcatttaatctttaactttttaatgaattaaatgcacaaaattttagagaatatttcttcttttatatttcttaacatgtgc 4993235  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
    ||||| ||||||||||| ||||||||    
T  4993234 cctaatggcacaagttaacactaccc 4993209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 39108641 - 39108515
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||||||| ||||||| ||| || ||| |||| ||||  ||||||||||||||||||| |||||||| ||||| |||||| ||||||||    
T  39108641 ttattggaatgtgtgcattgcatttaaactttaattttttaatcaattatatgcacaaaattttagagaatatttcttattttgagtttcttaacatgtg 39108542  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    |||||| ||||||||||| ||||||||    
T  39108541 ccctaaaggcacaagttaacactaccc 39108515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 32062301 - 32062427
Alignment:
Q  55 gttattggaatatgtgcattacatttaatcttcaa-ctttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatg 153  Q
    ||||||||||| ||| ||||||||||||||||  | |||| |||||||||||||||||||||||||| | | |||||||||||||| |||||| ||||||    
T  32062301 gttattggaatgtgtacattacatttaatcttttatctttttaatgaattgaatgcacaaaattttaaaaaatatttcttcttttgagtttcttaacatg 32062400  T
Q  154 tgccctaagggcacaagttagcactacc 181  Q
    |  ||||||| |||||||||||||||||    
T  32062401 t-tcctaaggtcacaagttagcactacc 32062427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 40740721 - 40740827
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||| ||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||| ||||| ||||||| ||||| | ||||||||    
T  40740721 ttattagaatgtgtacattacatttaatctttaactttttaatgatttgaatgcacaaaattttagagaatatttattcttttaggttttttaacatgtg 40740820  T
Q  156 ccctaag 162  Q
    |||||||    
T  40740821 ccctaag 40740827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 3727231 - 3727116
Alignment:
Q  69 tgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcaca 168  Q
    |||||||  ||||||||| | |||| |||||||||||||||||||||||||| | | ||||  ||||||| ||||| | ||||||||| ||||| ||| |    
T  3727231 tgcattatttttaatctttagctttttaatgaattgaatgcacaaaattttataaaatattcattcttttaggttttttaacatgtgctctaagagcaga 3727132  T
Q  169 agttagcactacccat 184  Q
    ||||| ||||||||||    
T  3727131 agttaacactacccat 3727116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 8669500 - 8669378
Alignment:
Q  58 attggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgcc 157  Q
    |||||||| ||||||||  ||||||| || || ||| ||||||||||||| ||||||| |||| ||| ||||| |  |||||  ||||| |||||||| |    
T  8669500 attggaatgtgtgcatttgatttaatatttaattttttaatgaattgaatacacaaaagtttaaagaatatttttaattttgaatttcttaacatgtgtc 8669401  T
Q  158 ctaagggcacaagttagcactac 180  Q
    ||||| |||||||||||||||||    
T  8669400 ctaagagcacaagttagcactac 8669378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 10361228 - 10361103
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    ||||||| | |||| ||| |||||||| || |||||| |||| | || ||||||||||||  ||||||   ||||||||||||| ||||| |||||||||    
T  10361228 tattggattgtgtgtattgcatttaatatttaactttttaatcatttaaatgcacaaaatcatagagaaagtttcttcttttggatttcttaacatgtgc 10361129  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
    | ||| ||||||||||| ||||||||    
T  10361128 cttaaaggcacaagttaacactaccc 10361103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 43027943 - 43027827
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||| |||| ||||||| | ||||||| || |||||| |||| ||||||||||| ||||||||| | | ||||| |||||||| |||||| |||||||||    
T  43027943 tattagaatttgtgcatcatatttaatatttaactttttaataaattgaatgcataaaattttaaaaattattttttcttttgagtttcttaacatgtgc 43027844  T
Q  157 cctaagggcacaagtta 173  Q
      |||| ||||||||||    
T  43027843 aataagagcacaagtta 43027827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 19174098 - 19174220
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||| |||||||| |||||||| || |||||| |||| | || |||||| ||||||||| ||| | ||||||||||| ||||| | ||||||||    
T  19174098 ttatttgaatgtgtgcattgcatttaatatttaactttttaatcatttaaatgcataaaattttaaagaatgtttcttcttttaggttttttaacatgtg 19174197  T
Q  156 ccctaagggcacaagttagcact 178  Q
      |||| ||||||||||| ||||    
T  19174198 ttctaaaggcacaagttaacact 19174220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 30203408 - 30203508
Alignment:
Q  79 ttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcact 178  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||| |||||| | |||| ||||  | |||||||| | |||| ||| |||||| ||||    
T  30203408 ttaatctttaactttttaatgagttgaatgcacaaaattttagagaatatttcattttttaggttctttaacatgtgtcttaagagcataagttaacact 30203507  T
Q  179 a 179  Q
    |    
T  30203508 a 30203508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 35878989 - 35879065
Alignment:
Q  55 gttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttc 131  Q
    ||||||| ||||||||||||| |||||||||| ||||||  ||||| ||||||||| ||||||| ||||| ||||||    
T  35878989 gttattgaaatatgtgcattaaatttaatctttaacttttcaatgatttgaatgcataaaatttaagagaatatttc 35879065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 38666404 - 38666526
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||||||||| |||||||| |||||||||| ||  || |||||| ||||||||||||| ||| ||||| | ||| || ||||   ||||| ||||||||     
T  38666404 tattggaatacgtgcattaaatttaatctttaatgtt-taatgacttgaatgcacaaagtttaagagaattttt-ttattttttatttcttaacatgtgt 38666501  T
Q  157 cctaagggcacaagttagcactacc 181  Q
    ||||||||||||||||| |||||||    
T  38666502 cctaagggcacaagttaacactacc 38666526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 5957101 - 5957038
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaatttt 119  Q
    |||||||||| || ||||| ||| ||||||| |||||| |||||||||||||||||||||||||    
T  5957101 ttattggaatgtgcgcatttcatataatctttaactttttaatgaattgaatgcacaaaatttt 5957038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 182
Target Start/End: Complemental strand, 44976205 - 44976091
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggca 166  Q
    ||||||||| |||||||||| || ||| || |||||| || ||||| ||||||||||| ||||| ||||||||| ||||| | |||||| | ||| | ||    
T  44976205 tgtgcatta-atttaatctttaattttttattgaattaaacgcacataattttagagaatattttttcttttggatttcttagcatgtgtcttaaagaca 44976107  T
Q  167 caagttagcactaccc 182  Q
    ||||||| ||||||||    
T  44976106 caagttaacactaccc 44976091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 4989323 - 4989195
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagaga--gtatttcttcttttgggtttctcaacatg 153  Q
    |||||| ||| |||| ||||||||||||||| | |||| |||| ||| |||||||||||||||||||||   | ||| |||||||   ||||| ||||||    
T  4989323 ttattgtaatgtgtgtattacatttaatctttagctttttaataaatagaatgcacaaaattttagagaattttttttttcttttaaatttcttaacatg 4989224  T
Q  154 tgccctaagggcacaagttagcactaccc 182  Q
    || | |||  |||||||||| ||||||||    
T  4989223 tgtcataaaagcacaagttaacactaccc 4989195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 36434699 - 36434790
Alignment:
Q  56 ttattggaatatgtgcattacattt-aatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttct 146  Q
    |||||| ||| |||||||| ||||| ||||||  ||||| | || ||||||||||||||||||||| ||| |||||||||||| | ||||||    
T  36434699 ttattgaaatgtgtgcattgcattttaatctttcacttttttataaattgaatgcacaaaattttaaagaatatttcttctttcgagtttct 36434790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 4810933 - 4811058
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| |||||||| | || |||||||||| || ||| |||| |||||| || ||| ||||||||||| ||| |||| |||| | | | | ||| ||||    
T  4810933 ttattgaaatatgtgaaatatatttaatcttaaaatttttaattaattgattgtacacaattttagagaatatatctttttttagttcttttaacgtgtg 4811032  T
Q  156 ccctaagggcacaagttagcactacc 181  Q
     ||||| | ||||||||| |||||||    
T  4811033 tcctaaagacacaagttaacactacc 4811058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 53287441 - 53287567
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||||||| |||||||| |  ||||||  ||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  53287441 ttattggaatgtgtgcattgcatttaatttgtaacttttcaatgaattgaatgcacaaaattttagagaatatttcttcttttggatttcttaacatgtg 53287540  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
    || ||||| |||| |||| ||||||||    
T  53287541 ccttaaggtcacaggttaacactaccc 53287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 12789958 - 12789848
Alignment:
Q  71 cattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaag 170  Q
    |||||||||||||||| |||||| |||| |||||||| || ||||||||||| | ||||| |||||||| |||||| |||||||||||||||| ||||||    
T  12789958 cattacatttaatctttaactttttaataaattgaatacataaaattttagaaaatatttattcttttgagtttcttaacatgtgccctaaggacacaag 12789859  T
Q  171 ttagcactacc 181  Q
    ||| |||||||    
T  12789858 ttaacactacc 12789848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 24657328 - 24657203
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| ||||||||| |||||||||| |||||| |||| |||||||| |||||||||||||| | ||||||||  ||||  ||||| ||||||||    
T  24657328 ttattggaatgtgtgcattatatttaatctttaactttttaataaattgaatacacaaaattttagaaaatatttctttctttgaatttcttaacatgtg 24657229  T
Q  156 ccctaagggcacaagttagcactacc 181  Q
     |||||||||| |||||| |||||||    
T  24657228 tcctaagggcataagttaacactacc 24657203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 42791163 - 42791048
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||| ||||| ||||||||||||||||| || || ||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||    
T  42791163 ttatgggaatgtgtgcattacatttaatttt-aagtttttaatgaattgaatgcacaaaattt-agagaatatttcttctttttggtttcttaacatgtg 42791066  T
Q  156 ccctaagggcacaagtta 173  Q
    |  |||||||||||||||    
T  42791065 ctataagggcacaagtta 42791048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 28392242 - 28392154
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggttt 144  Q
    |||||| ||| |||||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||||||||||| |||||    
T  28392242 ttattgaaatgtgtgcattacatttaatctttaactttttaatgtattgaatgcacaaaattttaaagaatatttcttcttttaggttt 28392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 20379048 - 20379174
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||| |||| ||||||||  ||||| |||| ||||||  |||| ||||||||||||||||||||||||  ||||||||||||| |||||| |||||||     
T  20379048 ttattagaatgtgtgcattttatttagtctttaacttttaaatgcattgaatgcacaaaattttagagaacatttcttcttttgagtttcttaacatgta 20379147  T
Q  156 ccctaagggcacaagttagcactaccc 182  Q
     ||||||| ||||||||| || |||||    
T  20379148 tcctaaggacacaagttaacattaccc 20379174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 30732817 - 30732940
Alignment:
Q  59 ttggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccc 158  Q
    ||||||| | ||||||  ||||||| || |||||| |||||||||||||  ||||||||||| | | ||||||||||||||||||||| ||||||||| |    
T  30732817 ttggaatgtatgcattgtatttaatatttaactttttaatgaattgaatttacaaaattttaaaaaatatttcttcttttgggtttcttaacatgtgctc 30732916  T
Q  159 taagggcacaagttagcactaccc 182  Q
    | | |  |||||||||||||||||    
T  30732917 ttaagatacaagttagcactaccc 30732940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 37700334 - 37700210
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| ||||||||| ||||||| || || ||| |||||||||||||||||| ||||||||||| || ||||| |||| ||||||| ||||| ||    
T  37700334 ttattggaatgtgtgcattatatttaattttaaattttttaatgaattgaatgcacacaattttagagaatagttctt-ttttaggtttcttaacatatg 37700236  T
Q  156 ccctaagggcacaagttagcactacc 181  Q
     |  ||||||||| |||| |||||||    
T  37700235 gctcaagggcacaggttaacactacc 37700210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 32733650 - 32733752
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    ||||||||| ||||||||| |||||||| | ||  || |||||||||||||||||||| ||| ||| | |||||||| |||||| ||||| |||||||||    
T  32733650 tattggaatctgtgcattaaatttaatcgttaatgttttaatgaattgaatgcacaaagtttaagaaaatatttctttttttggatttcttaacatgtgc 32733749  T
Q  157 cct 159  Q
    |||    
T  32733750 cct 32733752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 41519599 - 41519470
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttct--tcttttgggtttctcaacatg 153  Q
    |||||| || ||||||||| ||||||||||| || ||| |||| |||| |||||||||| ||||||  | |||||||  ||||||  |||| | ||||||    
T  41519599 ttattgaaaaatgtgcattgcatttaatctttaattttttaatcaattaaatgcacaaagttttaggaaatatttcttctcttttaagtttattaacatg 41519500  T
Q  154 tgccctaagggcacaagttagcactaccca 183  Q
    ||||||||| |||||||||| |||||||||    
T  41519499 tgccctaagagcacaagttaacactaccca 41519470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 20796429 - 20796553
Alignment:
Q  59 ttggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccc 158  Q
    ||||||| |||| |||  |||||||||   ||||| |||| ||||||||||| |||| | |||||| |||||||||||||||| |||| ||||||||| |    
T  20796429 ttggaatgtgtgtattttatttaatctctcactttttaataaattgaatgcataaaagtctagagaatatttcttcttttggg-ttcttaacatgtgctc 20796527  T
Q  159 taagggcac--aagttagcactaccc 182  Q
    |||||||||  |||||| ||||||||    
T  20796528 taagggcacataagttaacactaccc 20796553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 42760416 - 42760524
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttt---tgggtttctcaacatg 153  Q
    ||||||||| ||||||||| |||||||||| ||  || |||||||||||||||||||| ||| ||||| ||||| || |||   ||| ||||| ||||||    
T  42760416 tattggaatgtgtgcattaaatttaatctttaatgttttaatgaattgaatgcacaaagtttaagagaatattttttttttttatggatttcttaacatg 42760515  T
Q  154 tgccctaag 162  Q
     ||||||||    
T  42760516 cgccctaag 42760524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 46750209 - 46750140
Alignment:
Q  112 aaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactaccc 182  Q
    ||||||||||||| |||||||| ||||  |||||| ||||||||||||||| |||||||||| ||||||||    
T  46750209 aaaattttagagaatatttctt-ttttaagtttcttaacatgtgccctaagagcacaagttatcactaccc 46750140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 36771826 - 36771903
Alignment:
Q  108 gcacaaaat-tttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactacccat 184  Q
    ||||||||| ||||| || ||||| ||||||| ||||||| ||||||||  |||||||||||||||| ||||||||||    
T  36771826 gcacaaaatctttagggaatattttttcttttaggtttcttaacatgtgttctaagggcacaagttaacactacccat 36771903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 37311728 - 37311801
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagtta 173  Q
    |||||||||||||||||   ||||| | ||||| |||||||||| || ||||||||| ||||||||||||||||    
T  37311728 aattgaatgcacaaaatacaagagaatgtttctacttttgggttgcttaacatgtgctctaagggcacaagtta 37311801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 28554234 - 28554316
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagcactaccc 182  Q
    |||| |||||||||||||||| | | ||||||||||||| |   ||| |||||||||||| ||||||||| ||| ||||||||    
T  28554234 aattaaatgcacaaaattttaaaaaatatttcttcttttagaagtcttaacatgtgccctgagggcacaaattaacactaccc 28554316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 45054724 - 45054797
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagtta 173  Q
    ||||||||| ||||||||  || || | ||||| |||||| ||| || |||||||||||| |||||||||||||    
T  45054724 aattgaatgtacaaaattcaagggaatgtttctacttttgagttgcttaacatgtgcccttagggcacaagtta 45054797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 54362109 - 54362190
Alignment:
Q  95 taatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    |||| ||||||||||||||||||| |||   | ||| | ||||| |||| || ||  |||||||||||||||||||||||||    
T  54362109 taattaattgaatgcacaaaatttaagaatttttttatacttttaggttgcttaatgtgtgccctaagggcacaagttagca 54362190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 9e-29; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 24548087 - 24547962
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| || ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||| |||||||  |||||| |||||||     
T  24548087 ttattgaaaaatgtgcattacatttaatctttaactttttaatgaattgaatgcacataattttagagaatattttttcttttatgtttcttaacatgta 24547988  T
Q  156 ccctaagggcacaagttagcactacc 181  Q
    || |||  |||||||||| |||||||    
T  24547987 ccttaaaagcacaagttaacactacc 24547962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 4844442 - 4844570
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||| |||| ||||||| || |||||| |||| ||||||||||||||||||||| | | ||||||||||||| ||||||| ||||| ||    
T  4844442 ttattggaatgtgtgtattatatttaatatttaactttttaataaattgaatgcacaaaattttaaaaaatatttcttcttttaggtttcttaacatatg 4844541  T
Q  156 ccctaagggcacaagttagcactacccat 184  Q
    || ||||||||||| ||| | ||||||||    
T  4844542 ccataagggcacaaattaacgctacccat 4844570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 9318795 - 9318880
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaaggg--cacaagttagcactaccca 183  Q
    ||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||  |||||||||||||||||||    
T  9318795 aattgaatgcacaaaattttagagaatatttcttcttttgaatttcttaacatgtgccctaagggcacacaagttagcactaccca 9318880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 11842363 - 11842261
Alignment:
Q  61 ggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgcccta 160  Q
    ||||| |||||||| ||||||||||  ||||||  | ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| ||    
T  11842363 ggaatgtgtgcattgcatttaatctgtaacttttcagtgaattgaatgcacaaaattttagagaatatttcttcttttggatttcttaacatgtgcctta 11842264  T
Q  161 agg 163  Q
    |||    
T  11842263 agg 11842261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 3159695 - 3159570
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    |||||||||  || ||||| |||||||||| ||  || |||||||||||||||||||| ||| ||||| |||||||| ||||   ||||| |||||||||    
T  3159695 tattggaatgcgtacattaaatttaatctttaatgttttaatgaattgaatgcacaaagtttaagagaatatttctttttttaaatttcttaacatgtgc 3159596  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
    ||||||||||||||||||||| ||||    
T  3159595 cctaagggcacaagttagcaccaccc 3159570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 13243786 - 13243911
Alignment:
Q  57 tattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgc 156  Q
    ||||||||| ||||||||| ||||||| || ||  || |||||||||||||| ||||| ||| ||| | |||||||| |||||| ||||| |||||||||    
T  13243786 tattggaatgtgtgcattaaatttaatttttaatgttttaatgaattgaatgtacaaagtttaagaaaatatttctttttttggatttcttaacatgtgc 13243885  T
Q  157 cctaagggcacaagttagcactaccc 182  Q
    |||||||||||||||||  |||||||    
T  13243886 cctaagggcacaagttaatactaccc 13243911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 2617028 - 2617155
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    ||||||| || | |||||||||||||| ||| ||| || ||||| |||||||||| ||||||||||||| ||||| ||||||| | ||| | ||||||||    
T  2617028 ttattgggatgtatgcattacatttaacctttaacgttttaatgtattgaatgcataaaattttagagaatatttattcttttagattttttaacatgtg 2617127  T
Q  156 ccctaagggcacaagttagcactaccca 183  Q
    || ||||| ||||||||| |||||||||    
T  2617128 ccataaggacacaagttaacactaccca 2617155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 17515432 - 17515309
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| |||||||| ||| ||||||||||| |||||| |||| |||| |||| ||||||||||||||| ||||||||||||| ||||||| ||||  ||    
T  17515432 ttattgaaatatgtgtattgcatttaatctttaactttttaatcaattaaatgtacaaaattttagagaatatttcttcttttaggtttcttaacaaatg 17515333  T
Q  156 ccctaagggcacaagttagcacta 179  Q
     |||| || ||||||||| |||||    
T  17515332 tcctagggacacaagttaacacta 17515309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 3337663 - 3337787
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| |||||||| ||||||||| | |||||| |||| |||| |||||| ||||||||||||| || ||||||||||   ||||| ||||||||    
T  3337663 ttattggaatgtgtgcattgcatttaatcgttaactttttaatcaattaaatgcataaaattttagagaataattcttcttttaaatttcttaacatgtg 3337762  T
Q  156 ccctaagggcacaagttagcactacc 181  Q
     |||||| |||||||||| |||||||    
T  3337763 -cctaagcgcacaagttaacactacc 3337787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 9429667 - 9429545
Alignment:
Q  58 attggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgcc 157  Q
    |||| ||| |||||||| ||||||||||| || ||| |||| |||| |||||| ||||||||||| | |||||||||||| ||| |||| || |||||||    
T  9429667 attgaaatgtgtgcattgcatttaatctttaattttttaatcaattaaatgcataaaattttagaaaatatttcttctttcgggcttcttaatatgtgcc 9429568  T
Q  158 ctaagggcacaagttagcactac 180  Q
     ||| ||||||||||| ||||||    
T  9429567 ttaaaggcacaagttaacactac 9429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 33755517 - 33755407
Alignment:
Q  72 attacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagt 171  Q
    |||||||||||| || || ||| |||| |||||||||  ||||||||||| || ||| ||||||||||||||||| ||||| ||| |||| |||||||||    
T  33755517 attacatttaatttttaattttttaataaattgaatgggcaaaattttagggaatatgtcttcttttgggtttcttaacatatgctctaatggcacaagt 33755418  T
Q  172 tagcactaccc 182  Q
    || ||||||||    
T  33755417 taacactaccc 33755407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 7509715 - 7509639
Alignment:
Q  100 aattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    ||||||||||||||||||| |||   | ||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  7509715 aattgaatgcacaaaatttaagaacatgtttctacttttgggtttcttaacatgtgcccttagggcacaagttagca 7509639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 30323144 - 30323079
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttag 121  Q
    |||||||||| | || ||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  30323144 ttattggaatgtatgtattacatttaatctttaactttttaatgaattgaatgcactaaattttag 30323079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 2359699 - 2359813
Alignment:
Q  67 tgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggca 166  Q
    |||||||||||||||||| | |||||| || | |||| || |||||||||| || ||| ||||| ||||||| | ||| | ||||||||| |||||  ||    
T  2359699 tgtgcattacatttaatcgttaactttttattcaattaaaagcacaaaattctaaagaatattttttcttttagattttttaacatgtgctctaagaaca 2359798  T
Q  167 caagttagcactacc 181  Q
    ||||||| |||||||    
T  2359799 caagttaacactacc 2359813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 2557377 - 2557259
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaaca--tg 153  Q
    ||||| |||| |||| |||| |||||||||| |||||  || |||  |||||||||||  |||||||||  |||| || |||||||||||| ||||  ||    
T  2557377 ttattagaatgtgtgtattatatttaatctttaacttcttagtgatgtgaatgcacaac-ttttagagaacatttatttttttgggtttcttaacatgtg 2557279  T
Q  154 tgccctaagggcacaagtta 173  Q
    ||| ||||||||||||||||    
T  2557278 tgctctaagggcacaagtta 2557259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 50705 - 50593
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| ||||||||  |||||||||  || ||| |||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  50705 ttattggaatgtgtgcattgtatttaatctctaagtttttaatcaattaaatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtg 50606  T
Q  156 ccctaagggcaca 168  Q
    || ||||||||||    
T  50605 ccttaagggcaca 50593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 37225 - 37350
Alignment:
Q  55 gttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgt 154  Q
    ||||||||||| ||||||||||||||||| || |||||| ||| |||||||||||||||||||||| | | ||||||||||||| ||||| | |||||||    
T  37225 gttattggaatgtgtgcattacatttaatttt-aactttttaaagaattgaatgcacaaaattttaaaaa-tatttcttcttttaggttttttaacatgt 37322  T
Q  155 gccctaagggcacaagttagcactaccc 182  Q
    |||||||| ||||||| || ||||||||    
T  37323 gccctaagagcacaagataacactaccc 37350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 66172 - 66304
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttct-----tttgggtttctcaac 150  Q
    ||||||||||   ||||||||||||||| || |||||| || ||||||||||||||||||||||||||| ||||||||||     ||||| ||||| |||    
T  66172 ttattggaattcatgcattacatttaatttttaactttttagtgaattgaatgcacaaaattttagagaatatttcttcttttaatttggatttcttaac 66271  T
Q  151 atgtgccctaagggcacaagttagcactacccat 184  Q
    ||||| || ||||||| |||||| ||||||||||    
T  66272 atgtgtcc-aagggcataagttaacactacccat 66304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 8223 - 8343
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||||||| | ||||||| ||||||| ||  |  ||||||| |||||||||||||||| |||||| |  |||| | ||||||||||||| | ||||||    
T  8223 ttattggaatgtatgcattaaatttaatttttgaagttgtaataaattgaatgcacaaaactttagaaaacatttttacttttgggtttcttatcatgtg 8322  T
Q  156 ccctaagggcacaagttagca 176  Q
    |||||| | || |||||||||    
T  8323 ccctaacgacataagttagca 8343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 9121 - 9036
Alignment:
Q  91 tttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagttagca 176  Q
    |||||||| |||| |||| |||||| || ||||| ||||| | |||||  |||||| ||||||||| |||| | ||||||||||||    
T  9121 tttgtaataaattaaatgtacaaaacttgagagaatatttttacttttttgtttcttaacatgtgctctaaagacacaagttagca 9036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 223678 - 223803
Alignment:
Q  56 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtg 155  Q
    |||||| ||| |||| ||| |||| ||| || || ||| |||| |||| |||||| ||||||||| | | ||||||||||||| | ||| | || ||| |    
T  223678 ttattgcaatgtgtgtattgcattaaatgtttaaatttttaatcaattaaatgcataaaattttaaaaaatatttcttcttttagattttttaatatggg 223777  T
Q  156 ccctaagggcacaagttagcactacc 181  Q
    |||||| |||| |||||| |||||||    
T  223778 ccctaacggcataagttaacactacc 223803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 122528 - 122419
Alignment:
Q  72 attacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagagtatttcttcttttgggtttctcaacatgtgccctaagggcacaagt 171  Q
    ||||||||||||||| || ||| |||| ||||||||||||| ||||| ||| |   ||| ||||||| | ||| | ||||||||  | |||| |||||||    
T  122528 attacatttaatctttaattttttaatcaattgaatgcacataatttaagataaagtttattcttttagattttttaacatgtgttccaaggacacaagt 122429  T
Q  172 tagcactacc 181  Q
    || |||||||    
T  122428 taacactacc 122419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University