View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_7 (Length: 704)
Name: NF7179_low_7
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 182 - 670
Target Start/End: Original strand, 54844235 - 54844723
Alignment:
| Q |
182 |
cagtgctgtgaatcgcggaatgaataaaatagtgatttgttcaaattctgctacacttcctagttaattttactaaatagggtatggcggaacaagaaca |
281 |
Q |
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| T |
54844235 |
cagtgttgtgaatcgcggaatgaataaaatagtgatttgttcaaattctgctacacttcctggttaattttactaaatagggtatggcggaacaagaaca |
54844334 |
T |
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| Q |
282 |
atttattaaattctattacattatagtgagtcactaacaattagacaataaataaggaagcttaccgcgttgatgatcaagaggtctgagaatttcagca |
381 |
Q |
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| T |
54844335 |
atttattaaattctattacattatagtgagtcactaacaattagacaataaataaggaagcttaccgcgttgatgatcaagaggtctgagaatttcagca |
54844434 |
T |
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| Q |
382 |
acaatttgaccaacactttgaaaagacttcaaattatcctctgatttgttaaattccttaattgatttacgcaaatcgagtttaactgagaagagaaaga |
481 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54844435 |
acaatttgaccaacactttgaaaagacttcaaatcatcctctgatttgttaaattccttaattgatttacgcaaatcgagtttaactgagaagagaaaga |
54844534 |
T |
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| Q |
482 |
ggtattagctagcagagttgataataaggaaaaaagaatagggtttggtggtgggaatgaacctgaattgcgtctggattcaagctccttcttattgagg |
581 |
Q |
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| T |
54844535 |
gttattagctagcagagttgataataaggaaaaaagaatagggtttggtggtgggaatgaacctgaattgcgtctggattcaagctccttcttattgagg |
54844634 |
T |
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| Q |
582 |
agttttttgcgataatcattaaccactttacgacgttgaacgccatcatcactctcgcttaacgaagacgacatcgttcaactcaactc |
670 |
Q |
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| T |
54844635 |
agttttttgcgataatcattaaccactttacgacgttgaacgccatcatcactctcgcttaacgaagacgacatcgttcaactcaactc |
54844723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 54844066 - 54844183
Alignment:
| Q |
40 |
attgcataaataaaggttctgcttgtctgagcaagtgaaaattgggagtgtgaaaatgtaagactgtttggtttcatttcaaaaatacaatcatgtcttt |
139 |
Q |
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| T |
54844066 |
attgcataaataaaggttctgcttgtctgagcaagtgaaaattgggagtgtgaaaatgtaagactgtttggtttcatttcaaaaatacaatcatgtcttt |
54844165 |
T |
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| Q |
140 |
gaaaaattgtatgaaaac |
157 |
Q |
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| T |
54844166 |
gaaaaattgtatgaaaac |
54844183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 22204394 - 22204423
Alignment:
| Q |
207 |
aaaatagtgatttgttcaaattctgctaca |
236 |
Q |
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| T |
22204394 |
aaaatagtgatttgttcaaattctgctaca |
22204423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 7147094 - 7147122
Alignment:
| Q |
207 |
aaaatagtgatttgttcaaattctgctac |
235 |
Q |
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| T |
7147094 |
aaaatagtgatttgttcaaattctgctac |
7147122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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