View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_9 (Length: 625)
Name: NF7179_low_9
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 613
Target Start/End: Original strand, 8926470 - 8927063
Alignment:
| Q |
20 |
tatggaacaaaggttcaaagaaatggtagcaagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926470 |
tatggaacaaaggttcaaagaaatggtagcaagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgc |
8926569 |
T |
|
| Q |
120 |
catcttccttcttctaatatttcagagatcccagatcttgatgaagattacaggtcacatattttaatgttttgttaaaatatatatttagtatttaatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926570 |
catcttccttcttctaatatttcagagatcccagatcttgatgaagattacaggtcacatattttaatgttttgttaaaatatatatttagtatttaatt |
8926669 |
T |
|
| Q |
220 |
catatacaccatcagcgtnnnnnnnnttactattataattatttctaaagtcacacatataaaatcatatacttaaactcatatatttatatctttgtga |
319 |
Q |
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| T |
8926670 |
catatacactgtcagcgtaaaaaaaattactattataattatttctaaagtcacacatataaaatcatatacttaaactcatatatttatatctttgtga |
8926769 |
T |
|
| Q |
320 |
atttcaggaagacaatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8926770 |
atttcaggaagacaatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttggacttgagaaagggta |
8926869 |
T |
|
| Q |
420 |
cttgaagaaagtgttttatggatcaaagggtccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttaga |
519 |
Q |
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| T |
8926870 |
cttgaagaaagtgttttatggatcaaagggtccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttaga |
8926969 |
T |
|
| Q |
520 |
gcgcacacagatgctggtggcatcatccttctcttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtcc |
613 |
Q |
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| T |
8926970 |
gcacacacagatgctggtggcatcatccttctcttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtcc |
8927063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 55523217 - 55523373
Alignment:
| Q |
20 |
tatggaacaaaggttcaaagaaatggtagcaagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgc |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
55523217 |
tatggagcaaaggttcaaagaaatggtagcaagcaaaggtttagagtttgctcagtctgaaattaatgacttggattgggaaagcactttctttttgcgc |
55523316 |
T |
|
| Q |
120 |
catcttccttcttctaatatttcagagatcccagatcttgatgaagattacaggtca |
176 |
Q |
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| T |
55523317 |
caccttcctaactttaacatatcagagatccctgatcttgatcatgactacaggtca |
55523373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 452 - 613
Target Start/End: Original strand, 55527991 - 55528152
Alignment:
| Q |
452 |
caaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagatgctggtggcatcatccttct |
551 |
Q |
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|||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||| || | || |
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| T |
55527991 |
caaattttggaaccaaagttagcaactaccctccttgtcctaagccagatcttatcaaaggactcagagcccatacagatgctggtggcataattttact |
55528090 |
T |
|
| Q |
552 |
cttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtcc |
613 |
Q |
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||||||||||||||| || | ||||||||||| || ||||||| ||||||||||||||||| |
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| T |
55528091 |
cttccaagatgacaaggttggcggacttcagctccttaaagatggccaatggattgatgtcc |
55528152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 319 - 461
Target Start/End: Original strand, 55523582 - 55523724
Alignment:
| Q |
319 |
aatttcaggaagacaatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggt |
418 |
Q |
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||||| ||||||| ||||||||||||||||| | || | ||||| ||||| ||| |||||||||||| ||||||||||||||| || |||||||| | |
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| T |
55523582 |
aattttaggaagataatgaaggaatttgcagtggaacttgagaacctggctgagctacttcttgactttctgtgtgagaatcttgggctagagaaaggtt |
55523681 |
T |
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| Q |
419 |
acttgaagaaagtgttttatggatcaaagggtccaaattttgg |
461 |
Q |
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| T |
55523682 |
atttgaagaaagtctttcatggatccaagggaccaaattttgg |
55523724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 332 - 595
Target Start/End: Original strand, 37629326 - 37629589
Alignment:
| Q |
332 |
caatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggtacttgaagaaagt |
431 |
Q |
| |
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|||||||||||||||| ||| | |||| ||| |||||||| || || |||||||| ||||| ||||||| ||| || || |||||| | || || | |
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| T |
37629326 |
caatgaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggc |
37629425 |
T |
|
| Q |
432 |
gttttatggatcaaagggtccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagat |
531 |
Q |
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|| |||||||||||||| |||| |||||| || || ||| ||||||||||| || || || || || || | ||||| || | || ||||| ||| |
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| T |
37629426 |
tttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgat |
37629525 |
T |
|
| Q |
532 |
gctggtggcatcatccttctcttccaagatgacaaagtcagtggacttcagcttctcaaagatg |
595 |
Q |
| |
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|| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
37629526 |
gccggtggaatcatccttcttttccaagatgacaaggtcagtggccttcagcttctcaaagatg |
37629589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 611
Target Start/End: Complemental strand, 36872195 - 36871942
Alignment:
| Q |
358 |
gagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggtacttgaagaaagtgttttatggatcaaagggtccaaatt |
457 |
Q |
| |
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|||||||| ||||| || ||| | || || || ||||||||||||| ||| |||||||| ||| | || || | ||||||||||||| || |||| || |
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| T |
36872195 |
gagaaactagcagaagagcttttggatttgttatgtgagaatcttggactagagaaaggttaccttaaaaaggcattttatggatcaagaggaccaactt |
36872096 |
T |
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| Q |
458 |
ttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagatgctggtggcatcatccttctcttcca |
557 |
Q |
| |
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|||| || ||||| |||||||||| || || || || || || | ||||| ||| | || ||||| ||||| || || ||||||||||||||||| |
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| T |
36872095 |
ttggcaccaaagtagccaactaccctcaatgcccaaatccagagctggtgaagggtcttcgtgctcacaccgatgccggaggaatcatccttctcttcca |
36871996 |
T |
|
| Q |
558 |
agatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgt |
611 |
Q |
| |
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||||| || |||||||| || || | |||||||||| ||| ||| ||||||| |
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| T |
36871995 |
ggatgataaggtcagtggcctacaattgctcaaagatggccagtgggttgatgt |
36871942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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