View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_high_15 (Length: 237)
Name: NF7180_high_15
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 47157120 - 47156918
Alignment:
| Q |
16 |
cccgcgctacatgtgaacaatcctttggaaaatttcaatgacaaacaagtgaattaatttctcattacatttctttgagnnnnnnntatcacattctgtt |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47157120 |
cccgtgctacatgtgaacaatcctttggaaaatttcaatgacaaacaagtgaattaatttctcattacatttctttgagaaaaaaatatcacattctgtt |
47157021 |
T |
|
| Q |
116 |
tgatattttgtagaatttacctctcctttgctgtgaggttggggcagcagagaatagacgggtccttgtccttctttaccattataacaatcacgcaata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47157020 |
tgatattttgtagaatttacctctcctttgctgtgaggttggggcagcagagaatagacgggtccttgtccttctttaccattataacaatcacgcaata |
47156921 |
T |
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| Q |
216 |
ttg |
218 |
Q |
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||| |
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| T |
47156920 |
ttg |
47156918 |
T |
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