View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7180_high_16 (Length: 228)

Name: NF7180_high_16
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7180_high_16
NF7180_high_16
[»] chr3 (8 HSPs)
chr3 (1-228)||(16191282-16191517)
chr3 (14-80)||(8821216-8821282)
chr3 (36-82)||(14486957-14487003)
chr3 (36-82)||(14513608-14513654)
chr3 (36-82)||(14513680-14513726)
chr3 (36-82)||(17471540-17471586)
chr3 (24-80)||(8821152-8821208)
chr3 (36-80)||(14487031-14487075)
[»] chr4 (4 HSPs)
chr4 (16-68)||(20634443-20634495)
chr4 (36-82)||(25242834-25242880)
chr4 (19-79)||(44079204-44079264)
chr4 (36-82)||(24826160-24826206)
[»] chr1 (3 HSPs)
chr1 (34-82)||(41087995-41088043)
chr1 (36-155)||(7643994-7644112)
chr1 (34-78)||(41092740-41092784)
[»] chr2 (7 HSPs)
chr2 (24-87)||(28388649-28388712)
chr2 (36-82)||(4109544-4109590)
chr2 (36-81)||(45110106-45110151)
chr2 (36-82)||(4109472-4109518)
chr2 (36-78)||(5168813-5168855)
chr2 (36-82)||(45108344-45108390)
chr2 (36-80)||(45108417-45108461)
[»] scaffold0227 (3 HSPs)
scaffold0227 (36-82)||(20112-20158)
scaffold0227 (36-93)||(20040-20097)
scaffold0227 (36-82)||(20184-20230)
[»] chr7 (4 HSPs)
chr7 (36-82)||(12612428-12612474)
chr7 (36-82)||(17834626-17834672)
chr7 (36-82)||(12599804-12599850)
chr7 (36-82)||(12599948-12599994)
[»] chr5 (1 HSPs)
chr5 (13-78)||(5539162-5539227)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 16191517 - 16191282
Alignment:
Q  1 ctactatctctcgactggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgt--------ttggtggactgtaaactagtac 92  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  16191517 ctactatctctggactggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtcttgacatttggtggactgtaaactagtac 16191418  T
Q  93 aagttaacctcatcaaggacaaaagcctacatcttaacaagcttgaagcttggtggactatgggctcgtatgaaggaccataccacataaactatataac 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16191417 aagttaacctcatcaaggacaaaagcctacatcttaacaagcttgaagctctgtggactatgggctcgtatgaaggaccataccacataaactatataac 16191318  T
Q  193 actttgacaactcaactcgtgcatatctcaacttga 228  Q
    |||||||||||||||||||||| |||||||||||||    
T  16191317 actttgacaactcaactcgtgcctatctcaacttga 16191282  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 8821282 - 8821216
Alignment:
Q  14 actggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtggact 80  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||  |  |||||||||||||||||    
T  8821282 actggttcaagtcgactctatgaagaacaaacgtctacgccttaaccggtttgacgtttggtggact 8821216  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 14487003 - 14486957
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  14487003 aagaacaaacgtctacgccttaacagacttcacgcttggtggactgt 14486957  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 14513654 - 14513608
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  14513654 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 14513608  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 14513726 - 14513680
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    |||||||||| | ||||||||||||| ||||||| ||||||||||||    
T  14513726 aagaacaaacttatacgccttaataggcttgacgcttggtggactgt 14513680  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 17471540 - 17471586
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    |||||||||||||||| |||||| | |||||||| ||||||||||||    
T  17471540 aagaacaaacgtctacaccttaacatacttgacgcttggtggactgt 17471586  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 8821208 - 8821152
Alignment:
Q  24 gtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtggact 80  Q
    ||||| |||||||| |||||||||  |||||||||||| ||||||  ||||||||||    
T  8821208 gtcgaccctatgaataacaaacgttgacgccttaataggcttgacacttggtggact 8821152  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 14487075 - 14487031
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggact 80  Q
    |||||||||||| |||||||||| || ||| ||||||||||||||    
T  14487075 aagaacaaacgtttacgccttaacaggcttcacgtttggtggact 14487031  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 20634443 - 20634495
Alignment:
Q  16 tggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgac 68  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||    
T  20634443 tggtacatgtcaatcctatgaagaacaaaagtctacgccttaacagacttgac 20634495  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 25242834 - 25242880
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  25242834 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 25242880  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 44079264 - 44079204
Alignment:
Q  19 tacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtggac 79  Q
    |||||||| | |||||||||||||||||| || ||||| | || |||||||||||||||||    
T  44079264 tacaagtcaaccctatgaagaacaaacgtatatgccttgacaggcttgacgtttggtggac 44079204  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 24826160 - 24826206
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || || |||| ||||||||||||    
T  24826160 aagaacaaacgtctacgccttaacaggctagacgcttggtggactgt 24826206  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 41088043 - 41087995
Alignment:
Q  34 tgaagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  41088043 tgaagaacaaacgtctacgccttgacggacttgacgtttggtggactgt 41087995  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 7643994 - 7644112
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgtaaactagtacaagttaacctcatcaaggacaaaagcctacatcttaacaagct 135  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||  ||| ||| | ||  |||  || ||| ||||| | ||||  ||||||| |||    
T  7643994 aagaacaaacgtctacgccttaacaaacttgacgtttgatggactgtggact-gtataggtcgaccgaataaagaacaaacgtctacgccttaacatgct 7644092  T
Q  136 tgaagcttggtggactatgg 155  Q
    ||| ||||||||||||||||    
T  7644093 tgacgcttggtggactatgg 7644112  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 41092784 - 41092740
Alignment:
Q  34 tgaagaacaaacgtctacgccttaatagacttgacgtttggtgga 78  Q
    ||||||||||||||||||||||| |  ||||||| ||||||||||    
T  41092784 tgaagaacaaacgtctacgccttgacggacttgatgtttggtgga 41092740  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 28388649 - 28388712
Alignment:
Q  24 gtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtggactgtaaact 87  Q
    |||||||||||||||||||||  |||||| ||| | |||||||||| |||||||||||| ||||    
T  28388649 gtcgatcctatgaagaacaaatttctacgtcttgacagacttgacgcttggtggactgtgaact 28388712  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 4109590 - 4109544
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  4109590 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 4109544  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 45110151 - 45110106
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactg 81  Q
    ||||||||||||||||| ||||| || |||||||||||||||||||    
T  45110151 aagaacaaacgtctacgtcttaacaggcttgacgtttggtggactg 45110106  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 4109518 - 4109472
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||| | || ||||||| ||||||||||||    
T  4109518 aagaacaaacgtctacgccttcacaggcttgacgcttggtggactgt 4109472  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 5168813 - 5168855
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtgga 78  Q
    |||||||||| |||||||||||| || ||||||||||||||||    
T  5168813 aagaacaaacatctacgccttaaaagtcttgacgtttggtgga 5168855  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 45108390 - 45108344
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    |||||||||||||||| |||||| || ||||||| ||||||||||||    
T  45108390 aagaacaaacgtctacaccttaacagccttgacgcttggtggactgt 45108344  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 45108461 - 45108417
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggact 80  Q
    |||||||||||||||| |||||| || ||||||| ||||||||||    
T  45108461 aagaacaaacgtctacaccttaacaggcttgacgcttggtggact 45108417  T

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Target: scaffold0227 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 20112 - 20158
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  20112 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 20158  T

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Target: scaffold0227; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 20040 - 20097
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgtaaactagtaca 93  Q
    |||||||||||| |||||||||| || ||||||| ||||||||||||  |||||||||    
T  20040 aagaacaaacgtttacgccttaacaggcttgacgcttggtggactgtggactagtaca 20097  T

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Target: scaffold0227; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 20184 - 20230
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || ||||| | ||||||||||||    
T  20184 aagaacaaacgtctacgccttaacaggcttgatgcttggtggactgt 20230  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 12612474 - 12612428
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  12612474 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 12612428  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 17834626 - 17834672
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  17834626 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 17834672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 12599850 - 12599804
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||| ||||||| || ||||||| ||||||||||||    
T  12599850 aagaacaaacgtctatgccttaacaggcttgacgcttggtggactgt 12599804  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 12599994 - 12599948
Alignment:
Q  36 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 82  Q
    ||||||||||||||||||||||| || ||||| | ||||||||||||    
T  12599994 aagaacaaacgtctacgccttaacaggcttgatgcttggtggactgt 12599948  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 5539227 - 5539162
Alignment:
Q  13 gactggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtgga 78  Q
    ||||||| || ||||||  |||||||||||||||||||||  |||| ||||||| || ||||||||    
T  5539227 gactggttcaggtcgatgttatgaagaacaaacgtctacgttttaacagacttgtcgcttggtgga 5539162  T

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