View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_high_2 (Length: 564)
Name: NF7180_high_2
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 25702667 - 25703073
Alignment:
| Q |
13 |
aatatcactgacagaaagtatggatagttctatttgaagaaaatttgctataattagatgctttggaccaatgtcgtggatggttgattgcagaatatga |
112 |
Q |
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| T |
25702667 |
aatatcactgacagaaagtatggatagttctatttgtagaaaatttgctataactaggtgctttggaccaatgttgtggatggttgattgcagaatatga |
25702766 |
T |
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| Q |
113 |
tagaaggctaaaaatctgccatattaattataaaaacgctactgcggactatggcaccgccacgacggacatcccttcacaaattacattatcttgtttg |
212 |
Q |
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| T |
25702767 |
tagaaggctaaaaatctgccatattatttataaaaacactattgcggacaatggcaacgccatgatagacatcccttcacaaattacattatcttgtttg |
25702866 |
T |
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| Q |
213 |
tccaaaaaatctgccatggagtcgcaatggccgccatttaacgagattgattagaatatctgtacagaagattaacactagagggaggcctagaaaacga |
312 |
Q |
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| T |
25702867 |
tccaaaaaatctgccatggagtcgcaatggccgccatttaacgagattgattagaatatctgtacagaagattaacactagagggaggcctagaaaacga |
25702966 |
T |
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| Q |
313 |
t--aacaattcgacctcgtttgatttatgtatgtagtttatcccacctagtgggaaaagcttttggtggaactgtttgttgctgtatggatcgtgcattt |
410 |
Q |
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| T |
25702967 |
taaaacaatttgacctcatttgatttatgcatgtagtttatcccacctagtaggaaaagcttctggtgtaactgtttgttgttgtaaggatcatgcattt |
25703066 |
T |
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| Q |
411 |
tgtttta |
417 |
Q |
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| T |
25703067 |
tctttta |
25703073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 420 - 515
Target Start/End: Complemental strand, 28123395 - 28123300
Alignment:
| Q |
420 |
gtgtttgttttggcggtaagcttgacgcagccgtgcggtgagcaagaagctagaatatccagcttcacaaaatcgtggcagaactagcattgggac |
515 |
Q |
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| T |
28123395 |
gtgtttgttttggaggtagacttgacgcagccgtgcgttgaaagagaagctagaaaatccagcttcacaaaatcatggtaaaactagcactgggac |
28123300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 51529905 - 51529815
Alignment:
| Q |
457 |
gtgagcaagaagctagaatatccagcttcacaaaatcgtggcagaacta---gcattgggacgcaatatttgcaagtctgacacggaaccaaac |
547 |
Q |
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| T |
51529905 |
gtgagcaagaagctagaatatcg---tttacaaaattgtggcagaactactagcattggggcgcgatatttgcaaatatgacgcggaaccaaac |
51529815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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