View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_high_5 (Length: 333)
Name: NF7180_high_5
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 321
Target Start/End: Complemental strand, 38744242 - 38743939
Alignment:
| Q |
21 |
tatcatacagagtatatcaattaagcacgtattgtagatannnnnnnatgtatctaagaaatgtacaagtttcatgcacacgtgaattatggaaagtttg |
120 |
Q |
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| T |
38744242 |
tatcatacagagtatatcaattaagcacgtattgtagatatttttttatgtatctaagaaatgtacaagtttcatgcacacgtgaattatggaaagtttg |
38744143 |
T |
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| Q |
121 |
ttaagaattttttactnnnnnnntttctaacacctgtgttattatggtataactggaaacttggtactatgatgtcattatgagnnnnnnnnnn----gt |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38744142 |
ttaagaattttttactaaaaaa-tttctaacacctgtgttattatggtataactggaaacttggtactatgatgtcattatgagtttttttttttttggt |
38744044 |
T |
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| Q |
217 |
agtgatggtgtcactgtgatttgttgtaatgatatattacttcataaaatggcgccactaatctatttttagtgatttgatgagccaacaaaagttgatg |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38744043 |
agtgatggtgtcactatgatttgttgtaatgatatattacttcataaaatggcgccactaatctatttttagtgatttgatgagccaacaaaagttgatg |
38743944 |
T |
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| Q |
317 |
tccat |
321 |
Q |
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||||| |
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| T |
38743943 |
tccat |
38743939 |
T |
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