View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_high_7 (Length: 301)
Name: NF7180_high_7
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 38102665 - 38102395
Alignment:
| Q |
17 |
aaaaacacaggaatacaaccagctaaaattgaatcaaaaattgatcttcttgtgtatgaatcaccagaaggttgcaaagagaacacagaatttccaaaca |
116 |
Q |
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| T |
38102665 |
aaaaacacaggaatacaaccagctaaaattgaatcaaaaattgatcttcttgtgtatgaatcaccagaaggttgcaaagagaacacagaatttccaaaca |
38102566 |
T |
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| Q |
117 |
ccttcataacattaacaggatcatcacatttctctccaccgtaactacaatcaatgaatttgcaaaacctcgaaccacgacattgttcaataattttccc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38102565 |
ccttcataacattaacaggatcatcacatttctctccaccataactacaatcaatgaatttgcaaaacctcgaaccacgacattgttcaataattttccc |
38102466 |
T |
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| Q |
217 |
ccttatagaatcttcattttcaggccttggtgctccggtgaaagtaaacaaaaattctctcttttgatgtc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38102465 |
ccttatagaatcttcattttcaggccttggtgctccagtgaaagtaaacaaaaattctctcttttgatgtc |
38102395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 1211316 - 1211273
Alignment:
| Q |
23 |
acaggaatacaaccagctaaaattgaatcaaaaattgatcttct |
66 |
Q |
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| T |
1211316 |
acaggaatacaacccgccaaaatcgaatcaaaaattgatcttct |
1211273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 41948563 - 41948524
Alignment:
| Q |
23 |
acaggaatacaaccagctaaaattgaatcaaaaattgatc |
62 |
Q |
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| T |
41948563 |
acaggaatacaacccgccaaaattgaatcaaaaattgatc |
41948524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 54180089 - 54180144
Alignment:
| Q |
23 |
acaggaatacaaccagctaaaattgaatcaaaaattgatcttcttgtgtatgaatc |
78 |
Q |
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|||||||||||||| || ||||| ||||||||| ||||||| |||||||| ||||| |
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| T |
54180089 |
acaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatc |
54180144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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