View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_1 (Length: 904)
Name: NF7180_low_1
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 769; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 6 - 887
Target Start/End: Original strand, 4512629 - 4513510
Alignment:
| Q |
6 |
ctagattattcttataattcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacac |
105 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512629 |
ctagattactcttataattcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacac |
4512728 |
T |
|
| Q |
106 |
gaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtccactnnnnnnnnnnnnnnnnnnntcggagagaaaagaagttt |
205 |
Q |
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| T |
4512729 |
gaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtccactcacacacaagcacacacactcggagagaaaagaagttt |
4512828 |
T |
|
| Q |
206 |
caaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaacttttactcaggatgttgtt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512829 |
caaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaacttttactcaggatgttgtt |
4512928 |
T |
|
| Q |
306 |
gaagcgatggcctctttaaataaggtactttgtcaacctattcatcatcccaatatgcaatttgatgcttatgttatctgaatccatgcgccatatggta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4512929 |
gaagcgatggcctctttaaataaggtactttgtcaacctattcatcatcccaatatgcaatttgatgcttatgttatctgaatccatgtgccatatggta |
4513028 |
T |
|
| Q |
406 |
atgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtactgcagaagaagcttatacgtggactcaggtaatgtgaaaa |
505 |
Q |
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| T |
4513029 |
atgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtactgcagaagaagcttatacgtggactcaggtaatgtgaaaa |
4513128 |
T |
|
| Q |
506 |
cacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgataacgaagaatgactcttctcattcgttttttattcattgtcc |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4513129 |
cacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgataacgaagaatgactcttctcattcgttttttattcattgtcc |
4513228 |
T |
|
| Q |
606 |
gtttgtgtttctgtcagggacatgccatttttgctagcggtagtccattttccccagttgaatatgaaggaaaagtgtttgtacctggccaggtctgaac |
705 |
Q |
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| T |
4513229 |
gtttgtgtttctgtcagggacatgccatttttgctagcggtagtccattttccccagttgaatatgaaggaaaagtgtttgtacctggccaggtctgaac |
4513328 |
T |
|
| Q |
706 |
tcaatggaaagtttataaatgtcagaagnnnnnnnntccgtatcaaatgaattctaatttaannnnnnnngttaatcaggccaataacgcatacattttt |
805 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4513329 |
tcaatggaaagtttataaatgtcagaagaaaaaaaatccgtatcaaatgaattctaatttaattttttttgttaatcaggccaataacgcatacattttt |
4513428 |
T |
|
| Q |
806 |
cctggatttggtctcggtttaataatgtctggtacaatccgaatgcacgatggcttgcttctggcagcttgtaagtgcttca |
887 |
Q |
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| T |
4513429 |
cctggatttggtctcggtttaataatgtctggtacaatccgaatgcacgatggcttgcttctggcagcttgtaagtgcttca |
4513510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 43206699 - 43206652
Alignment:
| Q |
67 |
tcacttcaacatttcaagaagccatgggctcatgaacacgaacctgtt |
114 |
Q |
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| T |
43206699 |
tcacttcaacacttcaagaagccttgggctcatgaacacgagcctgtt |
43206652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 7e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 43432373 - 43432279
Alignment:
| Q |
404 |
taatgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtactgcagaagaagcttatacgtggactcaggtaat |
498 |
Q |
| |
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||||||| | ||||||||||||||||| |||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||| |
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| T |
43432373 |
taatgcttgtagaaacctattattctttctctttccaacccaacgtcacagtccgaatgtactgctgaagaagcttatacgtggacacaggtaat |
43432279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 43432742 - 43432638
Alignment:
| Q |
38 |
agggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaacttgtagatgctgttaa |
137 |
Q |
| |
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|||| |||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || ||| | ||||||||||| |
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| T |
43432742 |
agggattgattgtcagttcccgtaaagaatcactccaacatttcaagaagccgtgggctcatgaacacgaacctgttaaaaaccttcttgatgctgttaa |
43432643 |
T |
|
| Q |
138 |
agtac |
142 |
Q |
| |
|
|||| |
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|
| T |
43432642 |
tgtac |
43432638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 619 - 701
Target Start/End: Complemental strand, 43432203 - 43432121
Alignment:
| Q |
619 |
tcagggacatgccatttttgctagcggtagtccattttccccagttgaatatgaaggaaaagtgtttgtacctggccaggtct |
701 |
Q |
| |
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|||||||| ||| || ||||| || || || |||||||| || ||||||||| | || ||||||||||| ||||||||||||| |
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| T |
43432203 |
tcagggacgtgcgatctttgcaagtgggagcccattttcgccggttgaatataaggggaaagtgtttgtgcctggccaggtct |
43432121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 233 - 351
Target Start/End: Complemental strand, 43432557 - 43432439
Alignment:
| Q |
233 |
ttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaacttttactcaggatgttgttgaagcgatggcctctttaaataaggta |
332 |
Q |
| |
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||||||| ||||||||||||||||| | ||||||||||| || ||||| || | ||||| | || || ||||| |||||||||||| | || ||||| |
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| T |
43432557 |
ttttcagaaaattaagccaacagtgcttattggaacatcgggacaaggaagtgcgtttaccaaagaggtggttgaggcgatggcctctattaacgaggta |
43432458 |
T |
|
| Q |
333 |
ctttgtcaacctattcatc |
351 |
Q |
| |
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||| ||||| ||| ||||| |
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| T |
43432457 |
cttagtcaatctactcatc |
43432439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 3533801 - 3533733
Alignment:
| Q |
205 |
tcaaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagg |
274 |
Q |
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|||||||| ||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
3533801 |
tcaaatttctcatatttgaatgttttctttt-cggcaaattaagccaacagtgttgattggaatatcagg |
3533733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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