View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7180_low_10 (Length: 328)

Name: NF7180_low_10
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7180_low_10
NF7180_low_10
[»] chr4 (15 HSPs)
chr4 (21-316)||(17605591-17605886)
chr4 (21-312)||(17632184-17632475)
chr4 (21-316)||(16480209-16480504)
chr4 (21-259)||(16475351-16475589)
chr4 (21-275)||(17645761-17646015)
chr4 (22-125)||(17675919-17676023)
chr4 (54-125)||(17663658-17663729)
chr4 (281-316)||(16480568-16480603)
chr4 (145-298)||(17949741-17949894)
chr4 (145-298)||(17953593-17953746)
chr4 (27-128)||(20750972-20751073)
chr4 (69-125)||(17650321-17650377)
chr4 (227-297)||(17650182-17650252)
chr4 (145-298)||(20751105-20751258)
chr4 (145-298)||(18766826-18766979)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 17605886 - 17605591
Alignment:
Q  21 agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga 120  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17605886 agaatggagcacccttaatgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggg 17605787  T
Q  121 ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17605786 ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata 17605687  T
Q  221 tgaaaatcatgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaagaaaaaccaatcacaggtt 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17605686 tgaaattcatgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaagaaaaaccaatcacaggtt 17605591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 17632475 - 17632184
Alignment:
Q  21 agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga 120  Q
    ||||| ||||||||||| |||||||||| ||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17632475 agaatggagcacccttaatgaagcatgaccaggctattgataatctagcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggg 17632376  T
Q  121 ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata 220  Q
    || || ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | | || |||||||||| ||||||||||    
T  17632375 gggtcaggaactaaatgtgaatataaagggtattcaggtgatggaggcgaagaaaaaaggcttggtgatagtagatgcctataaggtgactggggggata 17632276  T
Q  221 tgaaaatcatgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaagaaaaaccaatcaca 312  Q
     |||| |||||||| | |  ||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17632275 ggaaattcatgttattttctggtgaaggcaatataaattcaaaagttggtgatagggggtcatttgtttgtgaggaagaaaaatcaatcaca 17632184  T

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Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 16480209 - 16480504
Alignment:
Q  21 agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga 120  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||| ||||||| |||    
T  16480209 agaatggagcacccttaatgaagcatgaccaaactattgataatctagcctctcagaacttgtagtagaatgaaaaaggcttgaagaaggtggagatgga 16480308  T
Q  121 ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata 220  Q
    ||||| ||||||||||||||  |||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||||| ||||||||||    
T  16480309 ggatccggaactaaatgtgataataaagggtattcaggcgatgatggtgaagaaaataggcttggtgatagtagaggcctataaggtgactggggggata 16480408  T
Q  221 tgaaaatcatgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaagaaaaaccaatcacaggtt 316  Q
     |||| |||||||  | |||||||| ||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16480409 ggaaattcatgttgtttttcggtgaaggcaacataaattcaaaatttggtgatggggggtcatttgtttgtgaggaagaaaaaccaatcacaggtt 16480504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 16475351 - 16475589
Alignment:
Q  21 agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga 120  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||| ||||||| |||    
T  16475351 agaatggagcacccttaatgaagcatgaccaaactattgataatctagcctctcagaacttgtagtagaatgaaaaaggcttgaagaaggtggagatgga 16475450  T
Q  121 ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata 220  Q
    ||||| ||||||||||||||  |||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||||| ||||||||||    
T  16475451 ggatccggaactaaatgtgataataaagggtattcaggcgatgatggtgaagaaaataggcttggtgatagtagaggcctataaggtgactggggggata 16475550  T
Q  221 tgaaaatcatgttactcttcggtgatggcaacataaatt 259  Q
     |||| |||||||  | |||||||| |||||||||||||    
T  16475551 ggaaattcatgttgtttttcggtgaaggcaacataaatt 16475589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 17646015 - 17645761
Alignment:
Q  21 agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga 120  Q
    ||||| ||||| ||||||||||||||||| |  ||||||||||||   |||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  17646015 agaatggagcagccttagtgaagcatgataaggctattgataatcaggcctcttgggacttgtagtataaggaaaaaggtttgaagaaattggagacgga 17645916  T
Q  121 ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata 220  Q
    ||||| || | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||  ||| ||||||||| |||||||    
T  17645915 ggatcaggtattaaatgtgaatagaaagggtattcaggtgatgaaggtgatgaaaaaaggcttggtgacagtaaaggtctatgaggtgattgaggggata 17645816  T
Q  221 tgaaaatcatgttactcttcggtgatggcaacataaatttagaagttggtgatag 275  Q
    |   | |||||||||| || ||||| | ||||||||||| ||||||| |||||||    
T  17645815 tatgattcatgttactttttggtgaagtcaacataaattcagaagtttgtgatag 17645761  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 17675919 - 17676023
Alignment:
Q  22 gaatagagcacccttagtgaagcatgatcaaa-ctattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga 120  Q
    |||||||||||||  | ||||||||||  ||  |||||||||| ||  ||||||||||||||||  ||||||||| | ||||||||||||||||||||||    
T  17675919 gaatagagcaccccaaatgaagcatgaggaagtctattgataacctgacctcttaggacttgtaaaagaaggaaatatgcttgaagaaagtggagacgga 17676018  T
Q  121 ggatc 125  Q
    |||||    
T  17676019 ggatc 17676023  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 17663658 - 17663729
Alignment:
Q  54 ctattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggaggatc 125  Q
    ||||||| || || ||||||||| |||||||  ||||||||||| || ||||||||||||||||||||||||    
T  17663658 ctattgaaaacctgtcctcttagtacttgtaaaagaaggaaaaatgcctgaagaaagtggagacggaggatc 17663729  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 316
Target Start/End: Original strand, 16480568 - 16480603
Alignment:
Q  281 catttgtttgtgaggaagaaaaaccaatcacaggtt 316  Q
    ||||||||||||||||||||||||||||||||||||    
T  16480568 catttgtttgtgaggaagaaaaaccaatcacaggtt 16480603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 298
Target Start/End: Original strand, 17949741 - 17949894
Alignment:
Q  145 aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatcatgttactcttcggtg 244  Q
    |||||||||| |||||||||| |  |||| |||||||||||||||||   |||  |||||||||| || ||| |||  ||| |||||||||| |   |||    
T  17949741 aaagggtatttaggtgatgaaagcaaagagaaaaggcttggtgatagttgagggctataaggtgactgagggaatagaaaattcatgttactttctagtg 17949840  T
Q  245 atggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaag 298  Q
    | ||||||| ||| |  ||||||  |||| | ||| ||||||||||||||||||    
T  17949841 aaggcaacaaaaactctgaagttaatgattgagggccatttgtttgtgaggaag 17949894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 298
Target Start/End: Original strand, 17953593 - 17953746
Alignment:
Q  145 aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatcatgttactcttcggtg 244  Q
    |||||||||| |||||||||| |  |||| |||||||||||||||||   |||  |||||||||| || ||| |||  ||| |||||||||| |   |||    
T  17953593 aaagggtatttaggtgatgaaagcaaagagaaaaggcttggtgatagttgagggctataaggtgactgagggaatagaaaattcatgttactttctagtg 17953692  T
Q  245 atggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaag 298  Q
    | ||||||| ||| |  ||||||  |||| | ||| ||||||||||||||||||    
T  17953693 aaggcaacaaaaactctgaagttaatgattgagggccatttgtttgtgaggaag 17953746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 20750972 - 20751073
Alignment:
Q  27 gagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggaggatcg 126  Q
    ||||||||| | ||||||||||  |  |||||||| ||||  ||| |||| | |||||  |||||||||||  ||||||||||||||||| |||||||||    
T  20750972 gagcaccctcaatgaagcatgagaagtctattgattatctggcctattagaatttgtaaaagaaggaaaaatacttgaagaaagtggagatggaggatcg 20751071  T
Q  127 gg 128  Q
    ||    
T  20751072 gg 20751073  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 17650377 - 17650321
Alignment:
Q  69 cctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggaggatc 125  Q
    ||||||||||||||||  ||||||||| |  | ||||||||||||||||||||||||    
T  17650377 cctcttaggacttgtaaaagaaggaaatatacctgaagaaagtggagacggaggatc 17650321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 17650252 - 17650182
Alignment:
Q  227 tcatgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaa 297  Q
    |||||||||| |||||||| | ||| | ||||| |||||||||||||   ||| |||||||||||||||||    
T  17650252 tcatgttactattcggtgaagacaataaaaattcagaagttggtgatctagggccatttgtttgtgaggaa 17650182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 298
Target Start/End: Original strand, 20751105 - 20751258
Alignment:
Q  145 aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaat-catgttactcttcggt 243  Q
    ||||||||||||||||||||| |  |||| |||||||| ||||||||   |||  |||||||||| || ||||||| |||||| ||||||||| |   ||    
T  20751105 aaagggtattcaggtgatgaaagcaaagagaaaaggctcggtgatagttgagggctataaggtgactgaggggata-gaaaatccatgttactttctagt 20751203  T
Q  244 gatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaag 298  Q
    || || |||| ||||| |||||||  |||| |  || |||||||||| |||||||    
T  20751204 gaaggtaacaaaaattcagaagttattgatcgaaggccatttgtttgcgaggaag 20751258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 298
Target Start/End: Complemental strand, 18766979 - 18766826
Alignment:
Q  145 aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatcatgttactcttcggtg 244  Q
    ||||| |||| |||||||||| |   ||| ||||| |||||||||||   |||  |||||||||| || |||||||| ||| |||||||||| |    ||    
T  18766979 aaaggatatttaggtgatgaaagcatagagaaaagacttggtgatagttgagggctataaggtgactgaggggatataaaattcatgttactttctaatg 18766880  T
Q  245 atggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaag 298  Q
    ||||||||| ||| | |||||||  |||| | ||| ||||| ||||||||||||    
T  18766879 atggcaacaaaaactcagaagttaatgatcgagggccatttttttgtgaggaag 18766826  T

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