View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7180_low_11 (Length: 324)

Name: NF7180_low_11
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7180_low_11
NF7180_low_11
[»] chr5 (3 HSPs)
chr5 (23-314)||(20227870-20228160)
chr5 (32-136)||(38924237-38924341)
chr5 (19-136)||(25230983-25231099)
[»] chr3 (2 HSPs)
chr3 (28-134)||(21525027-21525133)
chr3 (28-130)||(50565656-50565758)
[»] chr4 (2 HSPs)
chr4 (19-136)||(11429852-11429969)
chr4 (39-133)||(344523-344617)
[»] scaffold0290 (1 HSPs)
scaffold0290 (87-134)||(17035-17082)
[»] chr7 (1 HSPs)
chr7 (28-82)||(21915249-21915303)
[»] chr2 (1 HSPs)
chr2 (87-134)||(18990589-18990636)
[»] chr6 (1 HSPs)
chr6 (51-136)||(19091684-19091769)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 20227870 - 20228160
Alignment:
Q  23 ctttctttaataaaattttatgagcatagtggcagagaatggaggtgatcttgagatgtcaatttagttgggatgtcttgtctcctcctgatgtttttca 122  Q
    |||| |||||||||||||||||||||| ||||||||| ||| |||||||||||   ||||||  ||||||||||| ||||||||||| ||||||||||||    
T  20227870 ctttttttaataaaattttatgagcatggtggcagaggatgcaggtgatcttggagtgtcaacctagttgggatgccttgtctcctcatgatgtttttca 20227969  T
Q  123 ttgcttttgattcacnnnnnnnnnnnnnnnnngatattttagagactaaattgatgnnnnnnnnnctttattattactacaagtttatgttgtcattgca 222  Q
    ||||||||||||||                  ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  20227970 ttgcttttgattca-aaaaaaaaaaaaaaaaagatattttagagactaaattgatgtttttttttctttattattactacaagtttatgttgtcattgca 20228068  T
Q  223 ttcaatttgagataatttgtgtttattgnnnnnnngctttgatttgtattgaagggagaaatagaacaagagaagcttgattcatatgatgt 314  Q
    |||||||||||| ||||| ||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20228069 ttcaatttgagagaatttatgtttattatttttttgctttgatttgtattgaagggagaaatcgaacaagagaagcttgattcatatgatgt 20228160  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 38924237 - 38924341
Alignment:
Q  32 ataaaattttatgagcatagtggcagagaatggaggtgatcttgagatgtcaatttagttgggatgtcttgtctcctcctgatgtttttcattgcttttg 131  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||   |||||| ||||||||||||||||  | |||||  |||| || |||||||| ||    
T  38924237 ataaaattttatgagcatggtggcagaggatggaggtggtcttggagtgtcaacttagttgggatgtcttaacgcctccaaatgtcttccattgcttctg 38924336  T
Q  132 attca 136  Q
    |||||    
T  38924337 attca 38924341  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 25231099 - 25230983
Alignment:
Q  19 tttcctttctttaataaaattttatgagcatagtggcagagaatggaggtgatcttgagatgtcaatttagttgggatgtcttgtctcctcctgatgttt 118  Q
    |||||||| ||| ||||  |||| ||||||| |||||||||  |||||| | ||||| | || ||||||||| ||||||||||| |  ||| || ||| |    
T  25231099 tttcctttttttcataattttttttgagcattgtggcagagg-tggaggcggtcttggggtgccaatttagtagggatgtcttgacgtctcttgctgtct 25231001  T
Q  119 ttcattgcttttgattca 136  Q
    | ||||||||||||||||    
T  25231000 tccattgcttttgattca 25230983  T

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Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 21525133 - 21525027
Alignment:
Q  28 tttaataaaattttatgagcatagtggcagagaatggaggtgatcttgagatgtcaatttagttgggatgtcttgtctcctcctgatgtttttcattgct 127  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||||| || |||  ||||| ||||||||||||||||||||||||||| |||||||    
T  21525133 tttaataaaattttatgggcatggtggcagaggatggaggtgatcttgaggtgccaagctagtttggatgtcttgtctcctcctgatgttttccattgct 21525034  T
Q  128 tttgatt 134  Q
     ||||||    
T  21525033 attgatt 21525027  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 50565656 - 50565758
Alignment:
Q  28 tttaataaaattttatgagcatagtggcagagaatggaggtgatcttgagatgtcaatttagttgggatgtcttgtctcctcctgatgtttttcattgct 127  Q
    |||||||||||||||||| ||| ||||||||| |||||| || |||||   ||  || ||||||||||||| ||| | |||||| |||| || ||||| |    
T  50565656 tttaataaaattttatgatcatggtggcagaggatggagctggtcttggagtgaaaacttagttgggatgttttgacgcctcctaatgtcttccattggt 50565755  T
Q  128 ttt 130  Q
    |||    
T  50565756 ttt 50565758  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 11429852 - 11429969
Alignment:
Q  19 tttcctttctttaataaaattttatgagcatagtggcagagaatggaggtgatcttgagatgtcaatttagttgggatgtcttgtctcctcctgatgttt 118  Q
    |||||||| | |||||||| |||||||| || |||||| || |||||||||||| || | ||  ||  ||||| | || |||||||||||||| ||||||    
T  11429852 tttcctttttataataaaaatttatgagaatggtggcaaaggatggaggtgatcatggggtgcaaacctagttagaatatcttgtctcctcctaatgttt 11429951  T
Q  119 ttcattgcttttgattca 136  Q
    | ||||||||||||||||    
T  11429952 tccattgcttttgattca 11429969  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 344617 - 344523
Alignment:
Q  39 tttatgagcatagtggcagagaatggaggtgatcttgaga-tgtcaatttagttgggatgtcttgtctcctcctgatgtttttcattgcttttgat 133  Q
    ||||||||||| ||||||||  | |||||||||||| ||| |||||| |||||| ||||||||||| ||||| | |  |||| |||||||||||||    
T  344617 tttatgagcatggtggcagacgagggaggtgatctt-agagtgtcaacttagttaggatgtcttgtttcctcgtaacattttccattgcttttgat 344523  T

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Target: scaffold0290 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 17082 - 17035
Alignment:
Q  87 tagttgggatgtcttgtctcctcctgatgtttttcattgcttttgatt 134  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||    
T  17082 tagttggaatgtcttgtctcctcctgatgttttttattgcttttgatt 17035  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 21915303 - 21915249
Alignment:
Q  28 tttaataaaattttatgagcatagtggcagagaatggaggtgatcttgagatgtc 82  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||    
T  21915303 tttaataaaactttatgagcatggtggcagaggatggaggtgatcttgggatgtc 21915249  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 18990636 - 18990589
Alignment:
Q  87 tagttgggatgtcttgtctcctcctgatgtttttcattgcttttgatt 134  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  18990636 tagttggaatgtcttctctcctcctgatgttttttattgcttttgatt 18990589  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 19091769 - 19091684
Alignment:
Q  51 gtggcagagaatggaggtgatcttgagatgtcaatttagttgggatgtcttgtctcctcctgatgtttttcattgcttttgattca 136  Q
    |||| |||||||||||||||| ||| |||| |||  |||| ||||||||||||| ||||||||| || | |||||||  |||||||    
T  19091769 gtggtagagaatggaggtgattttgggatgacaacctagtagggatgtcttgtcccctcctgatattatccattgctcgtgattca 19091684  T

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