View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_14 (Length: 288)
Name: NF7180_low_14
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 4386641 - 4386381
Alignment:
| Q |
14 |
gacatcaagggctaccgagtgaagaaaatggcatgaagcggggttgacagaggaattaattgatttttctaaggtgggaattctaaagtttttctacggt |
113 |
Q |
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| T |
4386641 |
gacatcaagggctaccgagtgaagaaaatggcatgaagcggggttgacagaggaattaattgatttttctaaggtgggaattctaaagtttttctatggt |
4386542 |
T |
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| Q |
114 |
aggtttggatcttcattatttttctaaggaatgaattgacatttgaattcctctttctaatatatatttcgataatttagaacactaaattttgatatat |
213 |
Q |
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| T |
4386541 |
aggtttggatcttcattatttttctaaggaataaattgacatttgaattcctctttctaatatatatttcgataatttagaacactaaattttgatatat |
4386442 |
T |
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| Q |
214 |
gtaatgaactttttatacatggtttgattattacttttgataggtgatgaaaagaaatatc |
274 |
Q |
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| T |
4386441 |
gtaatgaactttttatacatggtttgattattacttttgataggtgatgaaaagaaatatc |
4386381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 4379037 - 4378797
Alignment:
| Q |
18 |
tcaagggctaccgagtgaagaaaatggcatgaagcggggttgaca------gaggaattaattgatttttctaaggtgggaattctaaagtttttctacg |
111 |
Q |
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| T |
4379037 |
tcaagggctattgagggaagaaaatggcatgaatcggagttgatatcaacggaggaatgaattgatttttctaagatggga-ttctatagtttttctatt |
4378939 |
T |
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| Q |
112 |
gtaggtttggatcttcattatttttctaaggaatgaattgacatttgaattcctctttctaatatatatttcgataatttagaacactaaattttgatat |
211 |
Q |
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| T |
4378938 |
gcaggtttggatcttcattatttttctaaggaatgagttgaaatttgaattcctcttcctaatatatatttcgataatttagaataataaattttaatat |
4378839 |
T |
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| Q |
212 |
atgtaatgaactttttatacatggtttgattattacttttga |
253 |
Q |
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| T |
4378838 |
atgtaatgaaatttttatacatggttcgatcattacttttga |
4378797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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