View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_19 (Length: 250)
Name: NF7180_low_19
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 34289782 - 34290023
Alignment:
| Q |
1 |
ttgaaaaccaacatcttttgcgttattgaggttgtcatgctttgcatcaatattggttggtaagaaatacatctccaagataggacaatcctcaatatca |
100 |
Q |
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| T |
34289782 |
ttgaaaaccaacatcttttacgttattgaggttgtcatgctttgcatcaatattggttggtaagaaatacatctccaagataggacaatcctcaatatca |
34289881 |
T |
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| Q |
101 |
aattgcttcaaggatggacattctaaccatagtgaatctgaacaaatactcacaagctttggaatgcttgaaagtgatacacaatcaagtttatcgaagc |
200 |
Q |
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| T |
34289882 |
aattgcttcaaggatggacattctaaccaaagtgaatctgaacaaatactcacaagctttggaaggcttgaaagtgatacacaatcaagtttattgaagc |
34289981 |
T |
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| Q |
201 |
taatagttgccacatgccctttattttcatcttcttcatctc |
242 |
Q |
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| T |
34289982 |
taatagttgccacatgccctttattttcatcttcttcatctc |
34290023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 34374473 - 34374392
Alignment:
| Q |
83 |
ggacaatcctcaatatcaaattgcttcaaggatggacattctaaccatagtgaatctgaacaaatactcacaagctttggaa |
164 |
Q |
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| T |
34374473 |
ggacaatcatcaatcttaaattccctcaaggatggatattctaactcaacagaatctgaacaaatattcacaagctttggaa |
34374392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 15893848 - 15894022
Alignment:
| Q |
56 |
gttggtaagaaatacatctccaagataggacaatcctcaatatcaaattgcttcaaggatggacattctaaccatagtgaatctgaacaaatactcacaa |
155 |
Q |
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| T |
15893848 |
gttggtaagaaagagatctccaacataggacaatgcacaacatcaaattgcttcaaggatggatattctaaccaaagtaattctgaacaaatactcacaa |
15893947 |
T |
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| Q |
156 |
gctttggaatgcttgaaagtgatacacaatcaagtttatcgaagctaatagttgccacatgccctttattttcat |
230 |
Q |
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| T |
15893948 |
gctttggaagtcttgaaagtgataaataacaaagtttattgaaaccaatagttttcacatgtcctttattgtcat |
15894022 |
T |
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