View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_21 (Length: 241)
Name: NF7180_low_21
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 19545093 - 19545321
Alignment:
| Q |
1 |
atgcaattggtcaggtaaaaaactacacagaccctttcacctaacacaacattaactaacaaagatagattagcaaaattatacagttcatgataacaac |
100 |
Q |
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| T |
19545093 |
atgcaattggtcaggtaaaaaactacacagaccctttcacctaacacaacattaactaacaaagatagattagcaaaattatacagttcatgataacaac |
19545192 |
T |
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| Q |
101 |
tattattttgcaggtagcaattgaagtaatttatgttgcaatccaaagtttaatctattccaatatcctttactggatgcttgggttcccaccgcaagtt |
200 |
Q |
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| T |
19545193 |
tattattttgcaggtagcaattgaagtaatttatgttgcaatccaaagtttaatctattccaatatcctttactggatgcttgggttcccaccgcaagtt |
19545292 |
T |
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| Q |
201 |
gaaaatttcttttggttctacttcttgat |
229 |
Q |
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| T |
19545293 |
gaaaatttcttttggttctacttcttgat |
19545321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 43531171 - 43530965
Alignment:
| Q |
6 |
attggtcaggtaaaaaactacacagaccctttcacctaacacaacattaactaacaaagatagattagcaaaattatacagttcatgataacaacta--t |
103 |
Q |
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| T |
43531171 |
attggtcaggtaaaa--ctacaca-accctttcacctaaaacaacattaattaacaaagataaattagcaaaattacacagatc-tgataacaactacat |
43531076 |
T |
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| Q |
104 |
tattttgcaggtagcaattgaagtaatttatgttgcaatccaaagtttaatctattccaatatcctttactggatgcttgggttcccaccgcaagttgaa |
203 |
Q |
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| T |
43531075 |
tattatgcaggtggcaattgaggtaatttatgtaacaatccaaagtctaatatattctaatatcctttac-cgatgtttgggttccaaccgcaagttaaa |
43530977 |
T |
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| Q |
204 |
aatttcttttgg |
215 |
Q |
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| T |
43530976 |
aatttcttttgg |
43530965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 43530880 - 43530967
Alignment:
| Q |
109 |
tgcaggtagcaattgaagtaatttatgttgcaatccaaag-----tttaatctattccaatatcctttactggatgcttgggttccca |
191 |
Q |
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| T |
43530880 |
tgcaggtggcaattgaagtaatttatgtagcaatccaaagtagtctctaatatattccaatatcctttactggatgtttgggttccca |
43530967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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