View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_23 (Length: 239)
Name: NF7180_low_23
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 49866395 - 49866631
Alignment:
| Q |
1 |
tctaaaactctcaaagaaagcctaaaataagtaactgttcaaaccagtacgagaaaatactattttcaaaaatgacttgagc-aatgtaccaaagcttaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49866395 |
tctaaaactctcaaagaaagcctaaaataagtaactgttcaaaccagtacgagaaaatactattttcaaaaatgacttgagccaatgtaccaaagcttaa |
49866494 |
T |
|
| Q |
100 |
gcaaatccattattggttgctgtgagatattataggttcagcaaattataggttcactagatgcagtaagcaaatatgacatgttgagaataggaggtga |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49866495 |
gcaaatccattattggttgctgcgagatattataggttcagcaaattataggttcactagatgcagtaagcaaatatg-tatgttgagaataggaggtga |
49866593 |
T |
|
| Q |
200 |
agttaaatggcaaatacgacatattgatgatgtccatc |
237 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
49866594 |
agttaaatggcaaatatgacatattgatgatgtccatc |
49866631 |
T |
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