View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_28 (Length: 221)
Name: NF7180_low_28
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 1923768 - 1923852
Alignment:
| Q |
25 |
atgttctcccataaatggagacagaaaagaaagacctcacaaggagtttccaaattagagttaaatttcattgtattgagttgca |
109 |
Q |
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| T |
1923768 |
atgttctcccataaatggagacagaaaagaaagacctcacaaggagtttccaaattagagttaaatttcattgcattgagttgca |
1923852 |
T |
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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 1923951 - 1924032
Alignment:
| Q |
128 |
atatttgcagattctttgagttatctgcttccttccatatatataaaggattatgaaatgttcacatagttagatttgatgt |
209 |
Q |
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| T |
1923951 |
atatttgcagattctttgagttatctgcttccttccatatatataaaggattatgaaatgttcacgtagttagatttgatgt |
1924032 |
T |
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