View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_4 (Length: 433)
Name: NF7180_low_4
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 4513113 - 4513510
Alignment:
| Q |
19 |
tcaggtaatgtgaaaacacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgataacgaagaatgactcttctcattcgt |
118 |
Q |
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| T |
4513113 |
tcaggtaatgtgaaaacacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgataacgaagaatgactcttctcattcgt |
4513212 |
T |
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| Q |
119 |
tttttattcattgtccgtttgtgtttctgtcagggacatgccatttttgctagcggtagtccattttccccagttgaatatgaaggaaaagtgtttgtac |
218 |
Q |
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| T |
4513213 |
tttttattcattgtccgtttgtgtttctgtcagggacatgccatttttgctagcggtagtccattttccccagttgaatatgaaggaaaagtgtttgtac |
4513312 |
T |
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| Q |
219 |
ctggccaggtctgaactcaatggaaagtttataaatgtcagaagnnnnnnnntccgtatcaaatgaattctaatttaannnnnnnngttaatcaggccaa |
318 |
Q |
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| T |
4513313 |
ctggccaggtctgaactcaatggaaagtttataaatgtcagaagaaaaaaaatccgtatcaaatgaattctaatttaattttttttgttaatcaggccaa |
4513412 |
T |
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| Q |
319 |
taacgcatacatttttcctggatttggtctcggtttaataatgtctggtacaatccgaatgcacgatggcttgcttctggcagcttgtaagtgcttca |
416 |
Q |
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| T |
4513413 |
taacgcatacatttttcctggatttggtctcggtttaataatgtctggtacaatccgaatgcacgatggcttgcttctggcagcttgtaagtgcttca |
4513510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 43432203 - 43432121
Alignment:
| Q |
148 |
tcagggacatgccatttttgctagcggtagtccattttccccagttgaatatgaaggaaaagtgtttgtacctggccaggtct |
230 |
Q |
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| T |
43432203 |
tcagggacgtgcgatctttgcaagtgggagcccattttcgccggttgaatataaggggaaagtgtttgtgcctggccaggtct |
43432121 |
T |
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