View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_6 (Length: 383)
Name: NF7180_low_6
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 28547361 - 28547714
Alignment:
| Q |
14 |
ttcactgattagacatagcataaaaa-tgaaatcgcactgatagagattttccttgattagccatggtataaaaagcaaactaccgtagaaaatgcaatt |
112 |
Q |
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| T |
28547361 |
ttcattgattagacatagcataaaaagtgaaatcgcacaaatagagattttccttgattagccatggtataaaaagtaaactaacgtagaaaatgcaatt |
28547460 |
T |
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| Q |
113 |
aaaaacaccattaaaacaacaagaagtattataatc-aagattatcaagannnnnnnnnnnnnattaatttgag--tacgaatcaaagttgaccacagga |
209 |
Q |
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| T |
28547461 |
aaaaacaccattaaaacaacaagaagaattataatctaagattatcaagattttttcctttttattaatttgagagtccgaatcagagttgaccacagga |
28547560 |
T |
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| Q |
210 |
gatggaggcttcaacaatgatggagtttgagggaccacattaccaccgttcacaagaggagatggaggtggaggaggtaagaagggaagtggtggatcat |
309 |
Q |
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| T |
28547561 |
gatggaggcttcgacaaagatggagtttgagggaccacaacaccaccgttcacaagaggagatggaggtggaggaggtaagaagggaagtggtggatcat |
28547660 |
T |
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| Q |
310 |
taaggttcacatcagaagacaaagcggttgatggcatgtttcttcctctcacaa |
363 |
Q |
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| T |
28547661 |
taaggttcacatcagaagacaaagcagttgatggcatgtttcttcctgtcacaa |
28547714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 70 - 363
Target Start/End: Original strand, 28566902 - 28567199
Alignment:
| Q |
70 |
ttagccatggtataaaaagcaaactaccgtagaaaatgcaattaaaaacaccattaaaacaacaagaagtattataatcaagattatcaagannnnnnnn |
169 |
Q |
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| T |
28566902 |
ttagacatagtataaaaagtaaacaaccgtagcagatgcaatcaaaaccacaatcagaacaacaagaaatattataacaaagattctcaagaatttttcc |
28567001 |
T |
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| Q |
170 |
nnnnnattaatttgag--tacgaatcaaagttgaccacaggagatggaggcttcaacaatgatggagtttgagggaccacattaccaccgttcacaagag |
267 |
Q |
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| T |
28567002 |
tctttattattttgagagtccggatcagagttgaccagaggagatggaggcttcgacaaagatggagtttgagggaccacatcaccaccgttcacaagag |
28567101 |
T |
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| Q |
268 |
gagatggaggtggaggagg--taagaagggaagtggtggatcattaaggttcacatcagaagacaaagcggttgatggcatgtttcttcctctcacaa |
363 |
Q |
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| T |
28567102 |
gggatggaggtggaggaggtataagaagggaagtggtggatcattaaaattcacgtcaggagacaaagtagttgatgacatgtttcttcctgtcacaa |
28567199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 191 - 365
Target Start/End: Original strand, 28554329 - 28554500
Alignment:
| Q |
191 |
atcaaagttgaccacaggagatggaggcttcaacaatgatggagtttgagggaccacattaccaccgttcacaagaggagatggaggtggaggaggtaag |
290 |
Q |
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|||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |
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| T |
28554329 |
atcagagttgaccataggagatggaggcttcgacaaagatggagtttgagggaccacaacaccaccgttcacaagaggagatggaggt---ggaggtatg |
28554425 |
T |
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| Q |
291 |
aagggaagtggtggatcattaaggttcacatcagaagacaaagcggttgatggcatgtttcttcctctcacaact |
365 |
Q |
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| T |
28554426 |
aagggaagtggtggatcattaaaatttatgtcataagacaaagcagttgatggcatgtttcttcctgtcacaact |
28554500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 28554190 - 28554295
Alignment:
| Q |
54 |
tagagattttccttgattagccatggtataaaaagcaaactaccgtagaaaatgcaattaaaaacaccattaaaacaacaagaagtattataatcaagat |
153 |
Q |
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| T |
28554190 |
tagagatcttcattggttagacatagtataaaaagtaaacaaccgtagcagatgcaatcaaaaccacaatcagaacaacaagaaatattataacaaagat |
28554289 |
T |
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| Q |
154 |
tatcaa |
159 |
Q |
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| T |
28554290 |
tctcaa |
28554295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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