View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7180_low_8 (Length: 347)
Name: NF7180_low_8
Description: NF7180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7180_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 46981592 - 46981273
Alignment:
| Q |
23 |
acatggcaggaggaaggaaacaagtttataaatactactattttccaaagaatgatcgatgcaaacaaaaacatcttcaaaaacagactcgtttctccac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
46981592 |
acatggcaggaggaaggaaacaagtttataaatactactattttccaaagaatgat----gcaaacaaaaacatcttcaaaaactgacttgtttctccac |
46981497 |
T |
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| Q |
123 |
ttccaaaatatgagcatcccttccctaaacatcatttcttcatgttttattaaaccttatcccacaatcaaagactcaaaccaaatatgttatttaacac |
222 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46981496 |
ttccaaaatatgagcatcccttccctaaacatcgtttcttcatgttttattaaaccttatcccacaatcaaagactcaaatcaaatatgttatttaacac |
46981397 |
T |
|
| Q |
223 |
attgggatattgccatgttatctacacactatatccaaaagggacttctcttcaagaaaccaacatc---atcactaaaccaacaccacttcattgagaa |
319 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||||| ||||| |
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| T |
46981396 |
attgggatattgccatgttatctacacattataaccaaaagggacttatcttcaaaaaaccaacatcatcatcactaaaccaacaacatttcatagagaa |
46981297 |
T |
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| Q |
320 |
cctggtggacaaactcaagcactc |
343 |
Q |
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||||||||| ||||| || ||||| |
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| T |
46981296 |
cctggtggagaaactgaaacactc |
46981273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 102 - 347
Target Start/End: Complemental strand, 46975527 - 46975282
Alignment:
| Q |
102 |
aaaacagactcgtttctccacttccaaaatatgagcatcccttccctaaacatcatttcttcatgttttattaaaccttatcccacaatcaaagactcaa |
201 |
Q |
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| T |
46975527 |
aaaagagactcgtttcttcacctccaaaatatgaggatcccttccctaaacattgtttctgcatgttttattaaaccttatccccctatcaaagactcaa |
46975428 |
T |
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| Q |
202 |
accaaatatgttatttaacacattgggatattgccatgttatctacacactatatccaaaagggacttctcttcaagaaaccaacatcatcactaaacca |
301 |
Q |
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| T |
46975427 |
accaaatatgctatctaacacattgggatattgccatgttatctacacactatatccaaaagggacttctcttcaagaaaccaacatcatcactaaacca |
46975328 |
T |
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| Q |
302 |
acaccacttcattgagaacctggtggacaaactcaagcactctctt |
347 |
Q |
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||| ||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
46975327 |
acaacacttcattgagaacctagtggacaaactcaaacactctctt |
46975282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 47002125 - 47002012
Alignment:
| Q |
164 |
atgttttattaaaccttatcccacaatcaaagactcaaaccaaatatgttatttaacacattgggatattgccatgttatctacacactatatccaaaag |
263 |
Q |
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|||||| || ||||| |||||| ||||| ||||||||||||||||||| |||||| || |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
47002125 |
atgtttcatcaaaccatatcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattgccatgatatcttcacactatatccaaaag |
47002026 |
T |
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| Q |
264 |
ggacttctcttcaa |
277 |
Q |
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|||||||||||||| |
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| T |
47002025 |
ggacttctcttcaa |
47002012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 164 - 343
Target Start/End: Complemental strand, 46998531 - 46998349
Alignment:
| Q |
164 |
atgttttattaaaccttatcccacaatcaaagactcaaaccaaatatgttatttaacacattgggatattgccatgttatctacacactatatccaaaag |
263 |
Q |
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||||||||| ||||| | |||| ||||| ||||||||||||||||||| |||||| || |||||||||| |||||||||| || ||||||| |||||| |
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| T |
46998531 |
atgttttatcaaaccatgtcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattagcatgttatctgcatactatattcaaaag |
46998432 |
T |
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| Q |
264 |
ggacttctcttcaagaaaccaacatc---atcactaaaccaacaccacttcattgagaacctggtggacaaactcaagcactc |
343 |
Q |
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| T |
46998431 |
ggtcttctcttcaaaaaaccaacatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactc |
46998349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 316
Target Start/End: Complemental strand, 46996264 - 46996116
Alignment:
| Q |
168 |
tttattaaaccttatcccacaatcaaagactcaaaccaaatatgttatttaacacattgggatattgccatgttatctacacactatatccaaaagggac |
267 |
Q |
| |
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||||| ||||||||||| |||| |||||||||| ||||| || |||||| ||| ||||||||||| |||||| ||| | | ||||||||||||| | |
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| T |
46996264 |
tttatcaaaccttatcctccaattgaagactcaaagcaaatttgctatttagcaccttgggatattgtcatgttgtctgcgaattatatccaaaaggccc |
46996165 |
T |
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| Q |
268 |
ttctcttcaagaaaccaacatcatcactaaaccaacaccacttcattga |
316 |
Q |
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|||||||||| |||||||| ||||||||||||||||| || |||||||| |
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| T |
46996164 |
ttctcttcaaaaaaccaacttcatcactaaaccaacagcatttcattga |
46996116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 46959193 - 46959099
Alignment:
| Q |
193 |
aagactcaaaccaaatatgttatttaacacattgggatattgccatgttatctacacactatatccaaaagggacttctcttcaagaaaccaaca |
287 |
Q |
| |
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|||| ||||| ||||| | |||||||||| |||||||||||| |||| ||||| |||||||||||||| || || | ||||| ||||||||| |
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| T |
46959193 |
aagattcaaagcaaatttcttatttaacaggttgggatattgctatgtcatctatgcactatatccaaaaaggcctattattcaaaaaaccaaca |
46959099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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