View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7181_high_2 (Length: 239)
Name: NF7181_high_2
Description: NF7181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7181_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 627989 - 627765
Alignment:
| Q |
1 |
aaaaaattgcatttactataaataaaatacataaacattaaaactaggtactctagcggatttggcaggaacttggtttaggagagcttaattttatttt |
100 |
Q |
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| T |
627989 |
aaaaaattgcatttactataaataaa-tacataaacattaaaactaggtactctagcggatttggcaggaacttggtttaggagagcttaattttatttt |
627891 |
T |
|
| Q |
101 |
cctctttgtaac--nnnnnnnncagtaaaactaggtgaaattgagagaagaaaatcgttaaaatctagaccaaaacataaaagtgataaagtaaattaat |
198 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
627890 |
cctctttgtaacaaaaaaaaaacattaaaactaggtgaaattgagagaagaaaatcgttaaaatctagacgaaaacataaaagtgataaagtaaattaat |
627791 |
T |
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| Q |
199 |
tagttatgtatttattggtcacaagt |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
627790 |
tagttatgtatttattggtcacaagt |
627765 |
T |
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