View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7181_low_1 (Length: 393)
Name: NF7181_low_1
Description: NF7181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7181_low_1 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 7948863 - 7948471
Alignment:
| Q |
1 |
aaattcatttggtcttctacctccttcaaccttaccagtgtaaggacataaagataaggaacaatgataacaagaaaacttactgattagttgatggaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||| |
|
|
| T |
7948863 |
aaattcatttggtcttctacctccttcaaccttaccggtgtaaggacataaagataaggaacaactataacatgctaactacttgattagttgatggaat |
7948764 |
T |
|
| Q |
101 |
caaatgttgcatgaaggaaaaagagaacaacagaacatgagaatagggactgagtctttcatggaatggaagcaatcacaaggtgtattcgaggcacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7948763 |
caaatgttgcatgaaggaaaaagagaacaacagaacatgagaatagggactgagcccttcatggaatggaagcaatcacaaggtgtattcgaggcacctt |
7948664 |
T |
|
| Q |
201 |
ttctctcttaacagaatgatttacttcttaaatgcctattgactctgtttcctaagccatttataaagtaagctatacaaccaagttgttagccattctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7948663 |
ttctctcttaacagaatgatttacttcttaaatgcctattgactctgtttcctaagccatttataatgtaagctatacaaccaagttgttagccattctc |
7948564 |
T |
|
| Q |
301 |
atttccactcttacaccacttaacatacaccttcttaaccattgagtacctaacacaaatataagttattttctgtactaacaatatcatatc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7948563 |
atttccactcttacaccacttaacatacactttcttaaccattgagtacctaacacaaatataagttattttctgtactaacaatatcatatc |
7948471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 5 - 393
Target Start/End: Complemental strand, 33000997 - 33000615
Alignment:
| Q |
5 |
tcatttggtcttct--acctccttcaaccttaccagtgtaaggacataaagataaggaacaatgataacaagaaaacttactgattagttgatggaatca |
102 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| |||||| ||||||||||||||||||| |||||| | ||| ||| |||||| | |||| |
|
|
| T |
33000997 |
tcatttggtcttctctacctctgtcagccttaccggtgtaacaacataaagataaggaacaactataacatgctaaccacttgacgtgttgatagtatca |
33000898 |
T |
|
| Q |
103 |
aatgttgcatgaaggaaaaagagaacaacagaacatgagaatagggactgagtctttcatggaatggaagcaatcacaaggtgtattcgaggcacctttt |
202 |
Q |
| |
|
| ||||||||| ||||| | ||||||| | || |||||||||||||||||| | |||| ||||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
33000897 |
actgttgcatggtggaaataaagaacaaaataatatgagaatagggactgagcccttcagggaatgggaacaatcacaaggtgtactcgaggcacctttt |
33000798 |
T |
|
| Q |
203 |
ctctcttaacagaatgatttacttcttaaatgcctattgactctgtttcctaagccatttataaagtaagctatacaaccaagttgttagccattctcat |
302 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
33000797 |
ctctcttaacagaatggttta---cttaaatgcctattgactctgtttcctaagctatttataaaataagctatacaactaggttgttagccattctcat |
33000701 |
T |
|
| Q |
303 |
ttccactcttacaccacttaacatacaccttcttaaccattgagtacctaacacaaatataagttattttctgtactaacaatatcatatc |
393 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
33000700 |
ttcc-ctcttacaccactttacatacactttcttaaccattgagtgcctaacacaa----aagttattttctctactgacaatatcatatc |
33000615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University