View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7181_low_2 (Length: 257)

Name: NF7181_low_2
Description: NF7181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7181_low_2
NF7181_low_2
[»] chr5 (11 HSPs)
chr5 (1-239)||(15084242-15084480)
chr5 (4-219)||(15358588-15358803)
chr5 (9-219)||(15332483-15332693)
chr5 (4-227)||(15428159-15428394)
chr5 (9-216)||(16415314-16415521)
chr5 (71-227)||(15348311-15348467)
chr5 (71-239)||(15336923-15337091)
chr5 (95-143)||(16410072-16410120)
chr5 (152-216)||(15444923-15444987)
chr5 (95-144)||(15444854-15444903)
chr5 (95-136)||(16399445-16399486)
[»] chr4 (1 HSPs)
chr4 (4-239)||(18688761-18688996)
[»] chr3 (1 HSPs)
chr3 (95-207)||(8188431-8188543)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15084480 - 15084242
Alignment:
Q  1 tgcccttgacaatttgacctcactcattcagagaaagatagacctatttcttggtttcgaaaaagacttcaaaagtctttcaagtttgattactacaatc 100  Q
    |||||||||||||||||||||||||||||||| ||| || | ||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||    
T  15084480 tgcccttgacaatttgacctcactcattcagaaaaatatcggcctatttcttggttttgaacaagactttaaaaatctttcaagtttgattactacaatc 15084381  T
Q  101 aaggcaacacttgaagatgctgaggagaaacaattcactgacaaagctgtcaaggtttggttgcttaagcttaaagatgctgcttacgtcctcgatgata 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15084380 aaggcaacacttgaagatgctgaggagaaacaattcaccgacaaagctgtcaaggtttggttgcttaagcttaaagatgctgcttacgtcctcgatgata 15084281  T
Q  201 tcttggacgagtgtgccaccaatgcacgggatttggagt 239  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  15084280 tcttggatgagtgtgccaccaatgcacgggagttggagt 15084242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 15358803 - 15358588
Alignment:
Q  4 ccttgacaatttgacctcactcattcagagaaagatagacctatttcttggtttcgaaaaagacttcaaaagtctttcaagtttgattactacaatcaag 103  Q
    |||||||||||||| ||||||| ||||||   |||| | |||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||    
T  15358803 ccttgacaatttgagctcactcgttcagaaggagattggcctatttcttggtttcgagaaagacttcaaaagtctttcaagcttgctcactacaatcaag 15358704  T
Q  104 gcaacacttgaagatgctgaggagaaacaattcactgacaaagctgtcaaggtttggttgcttaagcttaaagatgctgcttacgtcctcgatgatatct 203  Q
    || || ||||||||||||||||||||||| |||||| |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| || ||||    
T  15358703 gctactcttgaagatgctgaggagaaacagttcacttacaaagctatcaaggattggctgcttaagcttaaagatgctgcttatgtcctcgacgacatct 15358604  T
Q  204 tggacgagtgtgccac 219  Q
    |||| |||||||||||    
T  15358603 tggatgagtgtgccac 15358588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 15332693 - 15332483
Alignment:
Q  9 acaatttgacctcactcattcagagaaagatagacctatttcttggtttcgaaaaagacttcaaaagtctttcaagtttgattactacaatcaaggcaac 108  Q
    ||||||||| |||||| |||||||  ||| |||  |||||||||||||||||  ||||||| |||||||||||||| ||| | |||||||||||||| ||    
T  15332693 acaatttgaactcactaattcagaagaagctagctctatttcttggtttcgatcaagactttaaaagtctttcaagcttgctcactacaatcaaggctac 15332594  T
Q  109 acttgaagatgctgaggagaaacaattcactgacaaagctgtcaaggtttggttgcttaagcttaaagatgctgcttacgtcctcgatgatatcttggac 208  Q
     ||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||| | ||||||||||||| |||||||||    
T  15332593 tcttgaagatgccgaggagaaacaattcactgacaaagctatcaaagattggttgcttaagctcaaagatgctgttcacgtcctcgatgacatcttggac 15332494  T
Q  209 gagtgtgccac 219  Q
    |||||||||||    
T  15332493 gagtgtgccac 15332483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 15428159 - 15428394
Alignment:
Q  4 ccttgacaatttgacctcactcattcagagaaagatagacctatttcttggtttcgaaaaagacttcaaaagtctttcaagtttgattactacaatcaag 103  Q
    |||||||||||| | ||||||| ||||||   || | | ||||||||||||||||||||| ||||| |||||||||||||| ||| | ||||||||||||    
T  15428159 ccttgacaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcactacaatcaag 15428258  T
Q  104 gcaacacttgaagatgctgaggagaaacaattcactga------------caaagctgtcaaggtttggttgcttaagcttaaagatgctgcttacgtcc 191  Q
    || || |||||||||||||||||||| |||||||||||            ||||||| |||||| |||| | ||||||||||||||||||||||||||||    
T  15428259 gctacgcttgaagatgctgaggagaagcaattcactgatcctgttcatggcaaagctatcaaggattggctacttaagcttaaagatgctgcttacgtcc 15428358  T
Q  192 tcgatgatatcttggacgagtgtgccaccaatgcac 227  Q
    |||||||||||||||| |||||||||||||| ||||    
T  15428359 tcgatgatatcttggaagagtgtgccaccaaagcac 15428394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 16415521 - 16415314
Alignment:
Q  9 acaatttgacctcactcattcagagaaagatagacctatttcttggtttcgaaaaagacttcaaaagtctttcaagtttgattactacaatcaaggcaac 108  Q
    ||||||||| |||||||||||||| | |||| | |||||||||||||||| || ||||||| || ||||||||||| ||| |  |  |||||||||| ||    
T  16415521 acaatttgagctcactcattcagaaagagattggcctatttcttggtttccaacaagactttaatagtctttcaagcttgctctcatcaatcaaggctac 16415422  T
Q  109 acttgaagatgctgaggagaaacaattcactgacaaagctgtcaaggtttggttgcttaagcttaaagatgctgcttacgtcctcgatgatatcttggac 208  Q
     |||||||||||||||||||||||||||| | | | |||| |||||| |||| ||||||||||||||||| |||||||||| || ||||| |||||||||    
T  16415421 tcttgaagatgctgaggagaaacaattcagtaatagagctatcaaggattggctgcttaagcttaaagatactgcttacgttcttgatgacatcttggac 16415322  T
Q  209 gagtgtgc 216  Q
    ||||||||    
T  16415321 gagtgtgc 16415314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 15348467 - 15348311
Alignment:
Q  71 aaaagtctttcaagtttgattactacaatcaaggcaacacttgaagatgctgaggagaaacaattcactgacaaagctgtcaaggtttggttgcttaagc 170  Q
    ||||||||||| || ||| | |||||||||||||| ||||||||||||||||||||||| |||||| |  ||| |||| |||||| |||| |||||||||    
T  15348467 aaaagtctttccagcttgctaactacaatcaaggctacacttgaagatgctgaggagaagcaattctcaaacagagctatcaaggattggctgcttaagc 15348368  T
Q  171 ttaaagatgctgcttacgtcctcgatgatatcttggacgagtgtgccaccaatgcac 227  Q
    | |||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||    
T  15348367 tcaaagatgctgctcacgtcctcgatgacatcttggacgaatgtgccaccaaagcac 15348311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 71 - 239
Target Start/End: Complemental strand, 15337091 - 15336923
Alignment:
Q  71 aaaagtctttcaagtttgattactacaatcaaggcaacacttgaagatgctgaggagaaacaattcactgacaaagctgtcaaggtttggttgcttaagc 170  Q
    ||||||||||| || ||| | |||||||||||||| |||||||||||||||||||||||||||||| |  ||| |||| |||||| |||| || ||||||    
T  15337091 aaaagtctttccagcttgctaactacaatcaaggccacacttgaagatgctgaggagaaacaattctcaaacagagctatcaaggattggctggttaagc 15336992  T
Q  171 ttaaagatgctgcttacgtcctcgatgatatcttggacgagtgtgccaccaatgcacgggatttggagt 239  Q
    | |||||||||||| || |||||||||| || |||||||| ||||||||| | |||| ||| |||||||    
T  15336991 tcaaagatgctgctcacatcctcgatgacattttggacgaatgtgccacccaagcactggagttggagt 15336923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 16410120 - 16410072
Alignment:
Q  95 acaatcaaggcaacacttgaagatgctgaggagaaacaattcactgaca 143  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16410120 acaatcaaggctacacttgaagatgctgaggagaaacaattcactgaca 16410072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 15444923 - 15444987
Alignment:
Q  152 aaggtttggttgcttaagcttaaagatgctgcttacgtcctcgatgatatcttggacgagtgtgc 216  Q
    ||||||||| |||| || || ||||||||||||||| |||| ||||| |||||||||||||||||    
T  15444923 aaggtttggctgctaaatctcaaagatgctgcttacatccttgatgacatcttggacgagtgtgc 15444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 15444854 - 15444903
Alignment:
Q  95 acaatcaaggcaacacttgaagatgctgaggagaaacaattcactgacaa 144  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||| ||||    
T  15444854 acaatcaaggctacacttgaagatgctgaagagcaacaattcactaacaa 15444903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 16399486 - 16399445
Alignment:
Q  95 acaatcaaggcaacacttgaagatgctgaggagaaacaattc 136  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||    
T  16399486 acaattaaggctacacttgaagatgctgaagagaaacaattc 16399445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 18688996 - 18688761
Alignment:
Q  4 ccttgacaatttgacctcactcattcagagaaagatagacctatttcttggtttcgaaaaagacttcaaaagtctttcaagtttgattactacaatcaag 103  Q
    |||||| ||||||| ||||||| ||||||   || | | |||| |||||||||| |||||||||||||||||| |||||||  || | |||||||||||     
T  18688996 ccttgataatttgagctcactcgttcagaaggagcttggcctacttcttggttttgaaaaagacttcaaaagtttttcaagcatgctcactacaatcaaa 18688897  T
Q  104 gcaacacttgaagatgctgaggagaaacaattcactgacaaagctgtcaaggtttggttgcttaagcttaaagatgctgcttacgtcctcgatgatatct 203  Q
    || |||||||||||| |||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||     
T  18688896 gctacacttgaagatactgaggagaaacaatttactaacaaagctatcaaggattggttgcttaagcttaaagatgctgcctacgtccttgatgatatcc 18688797  T
Q  204 tggacgagtgtgccaccaatgcacgggatttggagt 239  Q
    ||||||||||||||||||| |||  ||| |||||||    
T  18688796 tggacgagtgtgccaccaaagcagtggagttggagt 18688761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 8188543 - 8188431
Alignment:
Q  95 acaatcaaggcaacacttgaagatgctgaggagaaacaattcactgacaaagctgtcaaggtttggttgcttaagcttaaagatgctgcttacgtcctcg 194  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||| |||||||||||| ||||||||     
T  8188543 acaatcaaggctacacttgaagatgctgaggagaaacaattcactgacagagctgtcaaggattggctgattaagctcaaagatgctgctcacgtcctca 8188444  T
Q  195 atgatatcttgga 207  Q
    |||| ||||||||    
T  8188443 atgacatcttgga 8188431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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