View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7181_low_4 (Length: 239)
Name: NF7181_low_4
Description: NF7181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7181_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 7949079 - 7948942
Alignment:
| Q |
7 |
ggacatcagaacataatccccatttcgtaccctctccatctccattattttgtcagtcaccctttgactgatttcaccattgtcacaaaactaaaagcac |
106 |
Q |
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| T |
7949079 |
ggacatcagaacataatccccatttcgtaccctctccatctccattattttgtcagtcaccctttgactgatttcaccattgtcacaaaactaaaagcac |
7948980 |
T |
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| Q |
107 |
ctgaaactccctccatattacagcttatctcaattcat |
144 |
Q |
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| T |
7948979 |
ctgaaactccctccatattacagcttatctcaattcat |
7948942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 7948917 - 7948848
Alignment:
| Q |
170 |
caccattgtttcttatcatcaacatttgtcagttttcaaactaggcttttctttaaattcatttggtctt |
239 |
Q |
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| T |
7948917 |
caccattgtttcttatcatcaacatttgtcagtttccaaactaggcttttctttaaattcatttggtctt |
7948848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 33001115 - 33001059
Alignment:
| Q |
8 |
gacatcagaacataatccccatttcgtaccctctccatctccattattttgtcagtc |
64 |
Q |
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||||||||||||||||||||| || |||||||||||||||| | ||||||||||||| |
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| T |
33001115 |
gacatcagaacataatccccactttgtaccctctccatctctagtattttgtcagtc |
33001059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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