View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7182_high_1 (Length: 583)

Name: NF7182_high_1
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7182_high_1
NF7182_high_1
[»] chr5 (11 HSPs)
chr5 (334-577)||(1580693-1580936)
chr5 (334-577)||(1603879-1604122)
chr5 (112-322)||(1591072-1591282)
chr5 (279-542)||(1590822-1591085)
chr5 (273-566)||(1587135-1587425)
chr5 (273-325)||(1586769-1586821)
chr5 (273-325)||(1586799-1586851)
chr5 (273-325)||(1586913-1586965)
chr5 (273-325)||(1586883-1586935)
chr5 (273-324)||(1587024-1587075)
chr5 (239-325)||(1586708-1586791)
[»] chr3 (2 HSPs)
chr3 (112-324)||(19270865-19271077)
chr3 (328-553)||(19270394-19270619)
[»] chr7 (3 HSPs)
chr7 (114-287)||(39616357-39616530)
chr7 (439-553)||(39616064-39616178)
chr7 (343-423)||(39616233-39616310)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 334 - 577
Target Start/End: Original strand, 1580693 - 1580936
Alignment:
Q  334 gtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnn 433  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1580693 gtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaa 1580792  T
Q  434 nnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatat 533  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  1580793 aaaaacaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatat 1580892  T
Q  534 catgtgtaaggaattgtttgattcagatctcagtaaacaccaaa 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1580893 catgtgtaaggaattgtttgattcagatctcagtaaacaccaaa 1580936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 334 - 577
Target Start/End: Complemental strand, 1604122 - 1603879
Alignment:
Q  334 gtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnn 433  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1604122 gtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaa 1604023  T
Q  434 nnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatat 533  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  1604022 aaaaacaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatat 1603923  T
Q  534 catgtgtaaggaattgtttgattcagatctcagtaaacaccaaa 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1603922 catgtgtaaggaattgtttgattcagatctcagtaaacaccaaa 1603879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 112 - 322
Target Start/End: Complemental strand, 1591282 - 1591072
Alignment:
Q  112 tttgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta 211  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1591282 tttgctatgactaaggagaagattaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta 1591183  T
Q  212 cacttgctccacaattttatactcaagaagagttagcacaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgttcgcca 311  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1591182 cacttgctccacaattttatactcaagaagagttagcagaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgtttgcca 1591083  T
Q  312 agaaacaatgg 322  Q
    |||||||||||    
T  1591082 agaaacaatgg 1591072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 279 - 542
Target Start/End: Complemental strand, 1591085 - 1590822
Alignment:
Q  279 ccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaagtggatgtcgtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagcatg 378  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1591085 ccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagatgtcgtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagca-g 1590987  T
Q  379 gctg-ataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattg 477  Q
      ||  | | ||| ||||||| || |||||||||| ||||||||||||   |||       || ||||||||||| |||||||||||||| |||||||||    
T  1590986 catgttttatgcggaaagaagtgttaaaccaaagaccacgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattg 1590887  T
Q  478 cctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaa 542  Q
    |||||| | || |||| ||||||||||||||| ||||| | |||||||||| |||||||||||||    
T  1590886 cctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaa 1590822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 273 - 566
Target Start/End: Original strand, 1587135 - 1587425
Alignment:
Q  273 tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaagtggatgtcgtgaataaaaagaaaaggtgtcgctcaagtgatgaaggt 372  Q
    |||| |||||||||||||||||  ||||   ||| ||||||||| ||||||||  ||| | |||||||||||||||||||||||||||||||||||||||    
T  1587135 tgttgtccaagaaacaatggaagaagat---gtttgccaagaaataatggaagaagatatagtgaataaaaagaaaaggtgtcgctcaagtgatgaaggt 1587231  T
Q  373 agca---tggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgc 469  Q
    ||||   || || ||  ||   |||||||||| |||||||||| ||||||||||||   |||       || ||||||||||| |||||||||||||| |    
T  1587232 agcagcatgtcttatgtgg---aaagaagagttaaaccaaagaccacgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcacctccac 1587328  T
Q  470 caatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcag 566  Q
    |||||||||||||| | || |||| ||||||||||||||| ||||| | |||||||||| |||||||||||||  |||||| ||  |||||||||||    
T  1587329 caatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatctcag 1587425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 1586769 - 1586821
Alignment:
Q  273 tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag 325  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  1586769 tgttgtccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaag 1586821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 1586799 - 1586851
Alignment:
Q  273 tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag 325  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1586799 tgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaag 1586851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 1586913 - 1586965
Alignment:
Q  273 tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag 325  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1586913 tgttcaccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaag 1586965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 1586883 - 1586935
Alignment:
Q  273 tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag 325  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  1586883 tgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaag 1586935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 1587024 - 1587075
Alignment:
Q  273 tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaa 324  Q
    |||| ||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  1587024 tgttgtccaagaaacaatagaaggagatcatgttcgccaaaaaacaatggaa 1587075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 1586708 - 1586791
Alignment:
Q  239 aagagttagcacaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag 325  Q
    ||||||||||||||||| ||||| || |||||| | ||  |||||||||||||||| |||   |||||  |||||||||||||||||    
T  1586708 aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggag---atgttgtccaagaaacaatggaag 1586791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 112 - 324
Target Start/End: Complemental strand, 19271077 - 19270865
Alignment:
Q  112 tttgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta 211  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  19271077 tttgctatgactaaggagaagatcaacgaatacatggaaatagcgaaaacagcgccattcaaccctcaccataattttgcttggcaatgcgtcatagcta 19270978  T
Q  212 cacttgctccacaattttatactcaagaagagttagcacaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgttcgcca 311  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19270977 cacttgctccccaattttatactcaagaagagttggcacaaataaagaaactctatcaacgtgttctccaagaaacaaaggaacgagatcatgttcgcca 19270878  T
Q  312 agaaacaatggaa 324  Q
    |||||||||||||    
T  19270877 agaaacaatggaa 19270865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 328 - 553
Target Start/End: Complemental strand, 19270619 - 19270394
Alignment:
Q  328 gatgtcgtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtag---catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaaga 424  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||   |||| || |    ||  |||||||||||||||||||||||||||||||||    
T  19270619 gatgtagtgaataaaaagaaaaggtgttgctcaagtgatgaaggtagaagcatgtctcac---gcagaaagaagagtgaaaccaaagagcacgaagaaga 19270523  T
Q  425 tggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatat 524  Q
    ||  |||       |||||||||||||| |||||||| ||||| ||||||||||||||| |  | |||| ||||||||||||||||||||| | ||||||    
T  19270522 tgaaaccaaaaaaacaagataaggaaaatttgtcatctcctccaccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatat 19270423  T
Q  525 caaacatatcatgtgtaaggaattgtttg 553  Q
    |||| |||||||| ||||  |||||||||    
T  19270422 caaatatatcatgggtaaaaaattgtttg 19270394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 114 - 287
Target Start/End: Complemental strand, 39616530 - 39616357
Alignment:
Q  114 tgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagctaca 213  Q
    |||||| |||| |||||||||||||| ||||||||||| ||| ||||| |||||| |||||| || |||||| ||| ||||||||||||| ||||||| |    
T  39616530 tgctatcactagggagaagatcaaaggatacatggaaaaagcaaaaacggcgccactcaacctttcccataactttgcttggcaatgcgtgatagctata 39616431  T
Q  214 cttgctccacaattttatactcaagaagagttagcacaaataaagaaactctatcaacgtgttctccaagaaac 287  Q
    | |||||||||||||||| || ||||||||||| ||||||||||||||| |  ||||| |||||||||||||||    
T  39616430 cgtgctccacaattttattctgaagaagagttaacacaaataaagaaacacagtcaacttgttctccaagaaac 39616357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 439 - 553
Target Start/End: Complemental strand, 39616178 - 39616064
Alignment:
Q  439 caagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgt 538  Q
    ||||||||| |||| ||| | | ||||||||||||||| |||||| ||||| ||| ||||||||| ||||||||||| | |||||||| | |||||||||    
T  39616178 caagataagaaaaatttggctttacctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgt 39616079  T
Q  539 gtaaggaattgtttg 553  Q
      ||| |||||||||    
T  39616078 caaagaaattgtttg 39616064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 423
Target Start/End: Complemental strand, 39616310 - 39616233
Alignment:
Q  343 aagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaag 423  Q
    ||||||||||||||| || ||||||||| ||||||| || ||   ||| ||||||||  ||||||||||| ||||||||||    
T  39616310 aagaaaaggtgtcgcccatgtgatgaagttagcatgtcttat---gcggaaagaagaacgaaaccaaagaccacgaagaag 39616233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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