View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7182_high_11 (Length: 271)

Name: NF7182_high_11
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7182_high_11
NF7182_high_11
[»] chr8 (10 HSPs)
chr8 (194-271)||(32121394-32121471)
chr8 (194-244)||(16413834-16413884)
chr8 (198-265)||(18833039-18833103)
chr8 (196-265)||(42819171-42819237)
chr8 (196-271)||(37515157-37515229)
chr8 (196-237)||(5760131-5760172)
chr8 (220-271)||(5760180-5760228)
chr8 (199-244)||(21386739-21386784)
chr8 (196-244)||(18863325-18863373)
chr8 (196-244)||(21828694-21828742)
[»] chr7 (18 HSPs)
chr7 (194-271)||(24274740-24274817)
chr7 (194-271)||(14933127-14933201)
chr7 (194-271)||(15356562-15356636)
chr7 (194-271)||(15360676-15360750)
chr7 (194-271)||(15082348-15082425)
chr7 (196-271)||(14257837-14257909)
chr7 (196-265)||(14183850-14183916)
chr7 (196-265)||(16585101-16585167)
chr7 (196-265)||(20585149-20585215)
chr7 (196-265)||(32300761-32300827)
chr7 (199-265)||(12466537-12466600)
chr7 (196-244)||(20487199-20487247)
chr7 (196-244)||(25927898-25927946)
chr7 (196-244)||(7519695-7519743)
chr7 (196-244)||(12705314-12705362)
chr7 (196-244)||(13919150-13919198)
chr7 (196-244)||(15083574-15083622)
chr7 (196-244)||(39721644-39721692)
[»] chr6 (16 HSPs)
chr6 (194-271)||(23992078-23992155)
chr6 (194-271)||(34963021-34963098)
chr6 (196-265)||(27126637-27126706)
chr6 (197-265)||(17105242-17105310)
chr6 (196-265)||(19774124-19774190)
chr6 (196-271)||(17742764-17742836)
chr6 (196-271)||(20182325-20182398)
chr6 (196-271)||(22153593-22153666)
chr6 (196-265)||(22805377-22805443)
chr6 (196-244)||(15706051-15706099)
chr6 (196-244)||(19656821-19656869)
chr6 (196-265)||(7825392-7825458)
chr6 (211-270)||(19656705-19656761)
chr6 (196-244)||(2076875-2076923)
chr6 (220-271)||(19656771-19656819)
chr6 (196-244)||(23414308-23414356)
[»] chr3 (24 HSPs)
chr3 (194-271)||(13543630-13543707)
chr3 (194-271)||(46821872-46821949)
chr3 (194-271)||(12120198-12120275)
chr3 (196-265)||(19884838-19884907)
chr3 (196-265)||(18700933-18701002)
chr3 (194-271)||(38962316-38962393)
chr3 (196-265)||(35353317-35353383)
chr3 (196-265)||(2842725-2842791)
chr3 (196-265)||(14681990-14682056)
chr3 (196-244)||(14440997-14441045)
chr3 (196-265)||(5214657-5214723)
chr3 (196-243)||(10543097-10543144)
chr3 (196-265)||(10562435-10562501)
chr3 (196-265)||(14670468-14670534)
chr3 (198-271)||(15565259-15565329)
chr3 (196-265)||(42353710-42353776)
chr3 (196-243)||(43890295-43890342)
chr3 (220-271)||(14441047-14441095)
chr3 (196-244)||(8489839-8489887)
chr3 (196-244)||(12339107-12339154)
chr3 (231-271)||(13520987-13521027)
chr3 (196-244)||(14665056-14665104)
chr3 (196-244)||(15464505-15464553)
chr3 (196-244)||(37440292-37440340)
[»] scaffold0023 (1 HSPs)
scaffold0023 (194-271)||(18117-18194)
[»] chr4 (9 HSPs)
chr4 (194-271)||(3484745-3484822)
chr4 (196-265)||(35812696-35812762)
chr4 (196-265)||(14548425-14548491)
chr4 (196-265)||(25090400-25090466)
chr4 (196-264)||(16997240-16997305)
chr4 (196-244)||(37018314-37018362)
chr4 (196-265)||(15042354-15042419)
chr4 (196-265)||(15112005-15112070)
chr4 (205-265)||(13592599-13592656)
[»] chr1 (9 HSPs)
chr1 (194-271)||(14238757-14238834)
chr1 (196-271)||(42911764-42911836)
chr1 (196-265)||(48519861-48519927)
chr1 (197-262)||(20241576-20241638)
chr1 (196-259)||(4597096-4597156)
chr1 (196-271)||(23967357-23967429)
chr1 (196-244)||(41781953-41782001)
chr1 (197-265)||(19675500-19675565)
chr1 (196-244)||(48602884-48602932)
[»] chr2 (10 HSPs)
chr2 (194-271)||(32215454-32215531)
chr2 (194-271)||(24367391-24367468)
chr2 (194-271)||(38967029-38967106)
chr2 (196-265)||(24514933-24514999)
chr2 (196-265)||(17306201-17306267)
chr2 (196-265)||(28653741-28653807)
chr2 (196-265)||(36838918-36838984)
chr2 (196-244)||(1282791-1282839)
chr2 (196-244)||(9784413-9784461)
chr2 (196-244)||(31344541-31344589)
[»] scaffold0546 (1 HSPs)
scaffold0546 (194-271)||(10607-10684)
[»] scaffold0109 (1 HSPs)
scaffold0109 (194-271)||(1117-1194)
[»] scaffold0494 (1 HSPs)
scaffold0494 (205-269)||(12765-12829)
[»] scaffold0205 (1 HSPs)
scaffold0205 (194-271)||(29205-29279)
[»] scaffold0032 (1 HSPs)
scaffold0032 (196-271)||(63508-63583)
[»] scaffold0019 (1 HSPs)
scaffold0019 (196-271)||(28755-28827)
[»] scaffold0203 (2 HSPs)
scaffold0203 (196-265)||(19334-19403)
scaffold0203 (231-271)||(19295-19335)
[»] scaffold0040 (1 HSPs)
scaffold0040 (194-265)||(102336-102404)
[»] scaffold0111 (3 HSPs)
scaffold0111 (196-265)||(20074-20140)
scaffold0111 (196-239)||(7057-7100)
scaffold0111 (196-239)||(14176-14219)
[»] scaffold0058 (1 HSPs)
scaffold0058 (194-265)||(925-993)
[»] scaffold0301 (1 HSPs)
scaffold0301 (196-265)||(10663-10729)
[»] scaffold0061 (1 HSPs)
scaffold0061 (196-265)||(19677-19743)
[»] scaffold0750 (1 HSPs)
scaffold0750 (194-235)||(3649-3690)
[»] scaffold0452 (1 HSPs)
scaffold0452 (196-265)||(13977-14043)
[»] chr5 (6 HSPs)
chr5 (196-265)||(33896148-33896214)
chr5 (196-244)||(22108034-22108082)
chr5 (196-244)||(11224712-11224760)
chr5 (196-244)||(11230524-11230572)
chr5 (196-244)||(18355620-18355668)
chr5 (196-244)||(24767923-24767971)
[»] scaffold0034 (1 HSPs)
scaffold0034 (205-265)||(116585-116642)
[»] scaffold0601 (1 HSPs)
scaffold0601 (196-244)||(8144-8192)
[»] scaffold0575 (1 HSPs)
scaffold0575 (196-244)||(6546-6594)
[»] scaffold0031 (1 HSPs)
scaffold0031 (196-244)||(36766-36814)
[»] scaffold1662 (1 HSPs)
scaffold1662 (205-265)||(693-750)
[»] scaffold0292 (1 HSPs)
scaffold0292 (196-237)||(4343-4384)
[»] scaffold0278 (1 HSPs)
scaffold0278 (196-271)||(7160-7232)
[»] scaffold0073 (1 HSPs)
scaffold0073 (201-268)||(56574-56638)
[»] scaffold0359 (1 HSPs)
scaffold0359 (201-263)||(15118-15177)
[»] scaffold0166 (1 HSPs)
scaffold0166 (196-244)||(10420-10468)
[»] scaffold0141 (1 HSPs)
scaffold0141 (196-244)||(14767-14815)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 32121394 - 32121471
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32121394 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaacttaacaactcatggatgataattc 32121471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 16413884 - 16413834
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16413884 tattcataagtacttcattaactacacatggatagaagacaacttaacaac 16413834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 18833039 - 18833103
Alignment:
Q  198 cataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  18833039 cataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 18833103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 42819237 - 42819171
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||  |||||||||||||||||||||||   ||||||||||||||||||    
T  42819237 ttcataagcacttcattaacaacatgtggatagaagacaactcaacaac---ttaacaactcatggatga 42819171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 37515157 - 37515229
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||| | | ||||||| ||||||||||||||||||||||||||||   ||||||||||||| |||| |||||    
T  37515157 ttcataagcaatacattaacaacacatggatagaagacaactcaacaac---ttaacaactcatgaatgacaattc 37515229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 5760131 - 5760172
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaact 237  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  5760131 ttcataagcacttcattaacaacacatggatagaagacaact 5760172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 5760180 - 5760228
Alignment:
Q  220 catggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||| |||||||||||   |||||||||||||||||| |||||    
T  5760180 catggatagaagataactcaacaac---ttaacaactcatggatgacaattc 5760228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 21386739 - 21386784
Alignment:
Q  199 ataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    ||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  21386739 ataagtacttctttaacaacacatgggtagaagacaactcgacaac 21386784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 18863373 - 18863325
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  18863373 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 18863325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 21828742 - 21828694
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  21828742 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 21828694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 24274740 - 24274817
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24274740 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaacttaacaactcatggatgataattc 24274817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 14933201 - 14933127
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  14933201 tattcataagtactttattaacaacacatggatagaagacaactcaacaac---ttaacaactcatggatgataattc 14933127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 15356636 - 15356562
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  15356636 tattcataagtactttattaacaacacatggatagaagacaactcaacaac---ttaacaactcatggatgataattc 15356562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 15360750 - 15360676
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  15360750 tattcataagtactttattaacaacacatggatagaagacaactcaacaac---ttaacaactcatggatgataattc 15360676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 15082425 - 15082348
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  15082425 tattcataagtacttcattaataacacatggatagaagacaactcaacaacttcataacaactcatggatgataattc 15082348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 14257837 - 14257909
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||   |||||||||||||||||| |||||    
T  14257837 ttcataagcacttcattaacaacacatgggtagaagacaactcaacaac---ttaacaactcatggatgacaattc 14257909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 14183916 - 14183850
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  14183916 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 14183850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 16585101 - 16585167
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||   ||||| ||||||||||||    
T  16585101 ttcataagcacttcattaacaacacatgggtagaagacaactcaacaac---ttaacgactcatggatga 16585167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 20585149 - 20585215
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||  |||||||||||||||||||||||   ||||||||||||||||||    
T  20585149 ttcataagcacttcattaacaacatgtggatagaagacaactcaacaac---ttaacaactcatggatga 20585215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 32300761 - 32300827
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||   ||||| ||||||||||||    
T  32300761 ttcataagcacttcattaacaacacatgggtagaagacaactcaacaac---ttaacgactcatggatga 32300827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 12466600 - 12466537
Alignment:
Q  199 ataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||| ||||    
T  12466600 ataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatgtatga 12466537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 20487199 - 20487247
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  20487199 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac 20487247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 25927946 - 25927898
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  25927946 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac 25927898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 7519743 - 7519695
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  7519743 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 7519695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 12705362 - 12705314
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  12705362 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 12705314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 13919198 - 13919150
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  13919198 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 13919150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 15083574 - 15083622
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  15083574 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 15083622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 39721644 - 39721692
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  39721644 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 39721692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 23992078 - 23992155
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23992078 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaacttaacaactcatggatgataattc 23992155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 34963021 - 34963098
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  34963021 tattcataagtacttcattaacaacatatggatagaatacaactcaacaacaacttaacaactcatggatgataattc 34963098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 27126706 - 27126637
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  27126706 ttcataagcacttcattaacaacacgtggatagaagacaactcatcaacaacttaacaactcatggatga 27126637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 17105242 - 17105310
Alignment:
Q  197 tcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  17105242 tcataagcacttcattaacaacacatggatagaagacaactcaataacaacttaacaactcgtggatga 17105310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 19774190 - 19774124
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||   ||||||||||||||||||    
T  19774190 ttcataagcacttcattaacaacacatgggtagaagacaactcaacaac---ttaacaactcatggatga 19774124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 17742764 - 17742836
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||| || |||||    
T  17742764 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggaggacaattc 17742836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 20182325 - 20182398
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||| |||||||| || |||||||| |||||||||||||||||||  |||||||||||||| |||| |||||    
T  20182325 ttcataagcacttcatttacaacacatgggtagaagacaactcaacaac--tttaacaactcatgtatgacaattc 20182398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 22153666 - 22153593
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||| |||||||| || |||||||| |||||||||||||||||||  |||||||||||||| |||| |||||    
T  22153666 ttcataagcacttcatttacaacacatgggtagaagacaactcaacaac--tttaacaactcatgtatgacaattc 22153593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 22805377 - 22805443
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||   ||||| ||||||||||||    
T  22805377 ttcataagcacttcattaacaacacatgggtagaagacaactcaacaac---ttaacgactcatggatga 22805443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 15706099 - 15706051
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  15706099 ttcataagcacttcattaacaacacatgggtagaagacaactcaacaac 15706051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 19656869 - 19656821
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  19656869 ttcataagcacttcattaacaacacatagatagaagacaactcaacaac 19656821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 7825392 - 7825458
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| || | |||||||||||||||||||||||   |||||||||| |||||||    
T  7825392 ttcataagcacttcattaacaactcgtggatagaagacaactcaacaac---ttaacaactcgtggatga 7825458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 19656761 - 19656705
Alignment:
Q  211 ttaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataatt 270  Q
    ||||| || |||||||||||||||||||||||||   |||||||||||||||||| ||||    
T  19656761 ttaacaactcatggatagaagacaactcaacaac---ttaacaactcatggatgacaatt 19656705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 2076875 - 2076923
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  2076875 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac 2076923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 19656819 - 19656771
Alignment:
Q  220 catggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||||||   ||| |||||||||||||| |||||    
T  19656819 catggatagaagacaactcaacaac---ttagcaactcatggatgacaattc 19656771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 23414308 - 23414356
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  23414308 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 23414356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 13543630 - 13543707
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13543630 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaacttaacaactcatggatgataattc 13543707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 46821872 - 46821949
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  46821872 tattcataagtacttcattaactacacatggatagaagataactcaataacaacttaacaactcatggatgataattc 46821949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 12120275 - 12120198
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||    |||||||||||||||||||||||    
T  12120275 tattcataagtacttcattaacgacacatggatagaaaacaactcaacaacttcataacaactcatggatgataattc 12120198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 19884907 - 19884838
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19884907 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaacaacttaacaactcatggatga 19884838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 18701002 - 18700933
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    ||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  18701002 ttcatgagcacttcattaacaacacatgggtagaagacaactcaacaacaacttaacaactcatggatga 18700933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 38962393 - 38962316
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| |||| ||||||||||||| |||||||||    |||||||||||| ||||||||||    
T  38962393 tattcataagtacttcattaacaacacgtggatagaagacatctcaacaacttcataacaactcatgaatgataattc 38962316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 35353317 - 35353383
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  35353317 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 35353383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 2842791 - 2842725
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   || |||||||||||||||    
T  2842791 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---tttacaactcatggatga 2842725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 14681990 - 14682056
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||   ||||||||||||||||||    
T  14681990 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac---ttaacaactcatggatga 14682056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 14440997 - 14441045
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  14440997 ttcataagcactttattaacaacacatggatagaagacaactcaacaac 14441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 5214657 - 5214723
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| | ||||||| |||||||||||||   ||||||||||||||||||    
T  5214657 ttcataagcacttcattaacaacacgtagatagaaaacaactcaacaac---ttaacaactcatggatga 5214723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 10543144 - 10543097
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaa 243  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  10543144 ttcataagcacttcattaacaacacatgggtagaagacaactcaacaa 10543097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 10562435 - 10562501
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| |||||||| || |||  |||||||||||||||||||||||   |||| |||||||||||||    
T  10562435 ttcataagcacttcatttacaacatgtggatagaagacaactcaacaac---ttaataactcatggatga 10562501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 14670468 - 14670534
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||| ||||||| ||||| |||||||| | |||||||||||||||||   | ||||||||||||||||    
T  14670468 ttcataggtacttctttaacaacacatgggttgaagacaactcaacaac---tcaacaactcatggatga 14670534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 15565259 - 15565329
Alignment:
Q  198 cataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||| ||||||||||| |||||||| |||||  ||||||||||||   |||||||||| ||||||| |||||    
T  15565259 cataagcacttcattaacaacacatgggtagaattcaactcaacaac---ttaacaactcgtggatgacaattc 15565329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 42353776 - 42353710
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||| ||| |||| ||||||||| |||||||| ||||   ||||||||||||||||||    
T  42353776 ttcataagcacttcatcaacaacacgtggatagaaaacaactcatcaac---ttaacaactcatggatga 42353710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 43890342 - 43890295
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaa 243  Q
    |||||||| ||||||| ||| |||||||| ||||||||||||||||||    
T  43890342 ttcataagcacttcataaacaacacatgggtagaagacaactcaacaa 43890295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 14441047 - 14441095
Alignment:
Q  220 catggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||| ||||||||   |||||||||||||||||| |||||    
T  14441047 catggatagaagacaaatcaacaac---ttaacaactcatggatgacaattc 14441095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 8489887 - 8489839
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  8489887 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 8489839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 12339107 - 12339154
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  12339107 ttcataggtacttctttaacaacacatgg-tagaagacaactcaacaac 12339154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 13521027 - 13520987
Alignment:
Q  231 gacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  13521027 gacaactcatcaacaacttaacaactcatggatgaaaattc 13520987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 14665056 - 14665104
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  14665056 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 14665104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 15464505 - 15464553
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  15464505 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 15464553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 37440340 - 37440292
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  37440340 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 37440292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 18194 - 18117
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18194 tattcataagtacttcattaaatacacatggatagaagacaactcaacaacaacttaacaactcatggatgataattc 18117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 3484745 - 3484822
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3484745 tattcataagtacttcattaacaacacatggatagaagacaactcaacaacaacttaacaactcatggatgataattc 3484822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 35812762 - 35812696
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||   ||||||| ||||||||||    
T  35812762 ttcataagcacttcattaacaacacatggatagaagacaactcaacaac---ttaacaattcatggatga 35812696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 14548425 - 14548491
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||| ||||||||||||||    
T  14548425 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttagcaactcatggatga 14548491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 25090400 - 25090466
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||  |||||||||||||||||||||||   ||||||||||||||||||    
T  25090400 ttcataagcacttcattaacaacaagtggatagaagacaactcaacaac---ttaacaactcatggatga 25090466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 16997240 - 16997305
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatg 264  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||    ||||||||||||||||    
T  16997240 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ctaacaactcatggatg 16997305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 37018314 - 37018362
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||||||    
T  37018314 ttcataagtacttcatgaacaacacgtggatagaagacaactcaacaac 37018362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 15042419 - 15042354
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| ||||||| |||||||||||||||   ||||||||||||||||||    
T  15042419 ttcataagcacttcattaacaacacgtggatag-agacaactcaacaac---ttaacaactcatggatga 15042354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 15112005 - 15112070
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| ||||||| |||||||||||||||   ||||||||||||||||||    
T  15112005 ttcataagcacttcattaacaacacgtggatag-agacaactcaacaac---ttaacaactcatggatga 15112070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 13592656 - 13592599
Alignment:
Q  205 acttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    ||||||||||  |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  13592656 acttcattaagaacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 13592599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 14238834 - 14238757
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14238834 tattcataagtacttcattaacaacacatggatagaagacaactcaacaacaacttaacaactcatggatgataattc 14238757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 42911764 - 42911836
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   |||||||||||||||||| |||||    
T  42911764 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggatgacaattc 42911836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 48519861 - 48519927
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  48519861 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 48519927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 20241576 - 20241638
Alignment:
Q  197 tcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatgga 262  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||   |||||||||||||||    
T  20241576 tcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatgga 20241638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 4597156 - 4597096
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcat 259  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||    
T  4597156 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcat 4597096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 23967357 - 23967429
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||| ||||||   |||||||||||||||| ||   |||||||||||||||||| |||||    
T  23967357 ttcataagtacttcattaacaacacatatgtagaagacaactcaactac---ttaacaactcatggatgacaattc 23967429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 41782001 - 41781953
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  41782001 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac 41781953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 19675500 - 19675565
Alignment:
Q  197 tcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    ||||||| ||||||||||| |||  |||||| || |||||||||||||   ||||||||||||||||||    
T  19675500 tcataagcacttcattaacaacatgtggatataaaacaactcaacaac---ttaacaactcatggatga 19675565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 48602884 - 48602932
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||| ||||    
T  48602884 ttcataggtacttctttaacaacacatgggtagaagacaactcagcaac 48602932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 32215531 - 32215454
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  32215531 tattcataagtacttcattaacaacacatggatagaatacaactcaacaacaacttaacaactcatggatgataattc 32215454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 24367391 - 24367468
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||    |||||||||||| ||||||||||    
T  24367391 tattcataagtacttcattaacaacacatggatagaagacagctcaacaacttcataacaactcatgaatgataattc 24367468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 38967029 - 38967106
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||||| |||||| |||||||||||||| |||||||||||||    |||||||||||||||||||||||    
T  38967029 tattcataagtactttattaacaacacatggatagaaaacaactcaacaacttcataacaactcatggatgataattc 38967106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 24514933 - 24514999
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  24514933 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 24514999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 17306201 - 17306267
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||| ||||||   ||||||||||||||||||    
T  17306201 ttcataagcacttcattaacaacacgtggatagaagacaactgaacaac---ttaacaactcatggatga 17306267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 28653807 - 28653741
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||  |||||||||||||||||||||||   ||||||||||||||||||    
T  28653807 ttcataagcacttcattaacaacatgtggatagaagacaactcaacaac---ttaacaactcatggatga 28653741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 36838918 - 36838984
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||| ||||    
T  36838918 ttcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatgaatga 36838984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 1282791 - 1282839
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  1282791 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 1282839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 9784413 - 9784461
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||| |||||||||||    
T  9784413 ttcataggtacttctttaacaacacatgggtagaagaaaactcaacaac 9784461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 31344541 - 31344589
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  31344541 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 31344589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0546 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 10607 - 10684
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  10607 tattcataagtacttcattaacaacacatggatagaacacaactcaacaacaacttaacaactcatggatggtaattc 10684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 1194 - 1117
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  1194 tattcataagtacttcattaacaacacatggatagaacacaactcaacaacaacttaacaactcatggatggtaattc 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 12829 - 12765
Alignment:
Q  205 acttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataat 269  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12829 acttcattaacaacacatggatagaagacaactcaacaacaacttaacaactcatggatgataat 12765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 29205 - 29279
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  29205 tattcaaaagtactttattaacaacacatggatagaagacaactcaacaac---ttaacaactcatggatgataattc 29279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 63583 - 63508
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  63583 ttcataagcacctcattaacaacacatggatagaagacaactcaacaacaacttaacaactcatggttgacaattc 63508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 28755 - 28827
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||||   ||||||||||||||||||||||||    
T  28755 ttcataagtactttattaacaacacatagatagaagacaactcaacaac---ttaacaactcatggatgataattc 28827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 19403 - 19334
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| || |||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  19403 ttcataagcacctcattaacaacacatggataaaagacaacttaacaacaacttaacaactcatggatga 19334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 19335 - 19295
Alignment:
Q  231 gacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  19335 gacaactcatcaacaacttaacaactcatggatgacaattc 19295  T

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Target: scaffold0040 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 102404 - 102336
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  102404 tattcataagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 102336  T

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Target: scaffold0111 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 20140 - 20074
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  20140 ttcataagcacttcattaacgacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 20074  T

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Target: scaffold0111; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 7057 - 7100
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactca 239  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  7057 ttcataagcacttcattaacaacacatggatagaagacaactca 7100  T

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Target: scaffold0111; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 14176 - 14219
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactca 239  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  14176 ttcataagcacttcattaacaacacatggatagaagacaactca 14219  T

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Target: scaffold0058 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 993 - 925
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||||| ||||||||||| |||| |||||||||||||| ||||||||   ||||||||||||||||||    
T  993 tattcataagcacttcattaacaacacgtggatagaagacaaatcaacaac---ttaacaactcatggatga 925  T

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Target: scaffold0301 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 10663 - 10729
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||| ||||||||||| |||||||||||   ||||||||||||||||||    
T  10663 ttcataagcacttcattaacaacacgtggatagaagataactcaacaac---ttaacaactcatggatga 10729  T

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Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 19743 - 19677
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||| ||| ||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  19743 ttcacaagcacttcattaacaacacgtggatagaagacaactcaacaac---ttaacaactcatggatga 19677  T

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Target: scaffold0750 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 3649 - 3690
Alignment:
Q  194 tattcataagtacttcattaactacacatggatagaagacaa 235  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3649 tattcataagtacttcattaacaacacatggatagaagacaa 3690  T

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Target: scaffold0452 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 14043 - 13977
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||||||| ||||||| |||||||||||   ||||| ||||||||||||    
T  14043 ttcataagcacttcattaacaacacatgggtagaagataactcaacaac---ttaacgactcatggatga 13977  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 33896214 - 33896148
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    |||||||| ||||||||||| |||||||| ||||||| ||||   |||||||||||| ||||||||||||    
T  33896214 ttcataagcacttcattaacaacacatgggtagaagataact---caacaatttaacgactcatggatga 33896148  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 22108082 - 22108034
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  22108082 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac 22108034  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 11224712 - 11224760
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  11224712 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 11224760  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 11230524 - 11230572
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  11230524 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 11230572  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 18355620 - 18355668
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  18355620 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 18355668  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 24767971 - 24767923
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  24767971 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 24767923  T

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Target: scaffold0034 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 116585 - 116642
Alignment:
Q  205 acttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    ||||||||||| |||||||| |||||||||||||||||||   ||||| ||||||||||||    
T  116585 acttcattaacaacacatgggtagaagacaactcaacaac---ttaacgactcatggatga 116642  T

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Target: scaffold0601 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 8192 - 8144
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  8192 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac 8144  T

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Target: scaffold0575 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0575
Description:

Target: scaffold0575; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 6594 - 6546
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  6594 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac 6546  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 36814 - 36766
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  36814 ttcataggtacttctttaacaacacatgggtagaagacaactcaacaac 36766  T

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Target: scaffold1662 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1662
Description:

Target: scaffold1662; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 750 - 693
Alignment:
Q  205 acttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatga 265  Q
    ||||||||||| | || |||| ||||||||||||||||||   ||||||||||||||||||    
T  750 acttcattaacaatacgtggagagaagacaactcaacaac---ttaacaactcatggatga 693  T

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Target: scaffold0292 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 4343 - 4384
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaact 237  Q
    |||||||| ||||||||||| |||||||| ||||||||||||    
T  4343 ttcataagcacttcattaacaacacatgggtagaagacaact 4384  T

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Target: scaffold0278 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 7160 - 7232
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataattc 271  Q
    |||||| ||||||| ||||| ||||| || ||| |||||||||||||||   |||||||||||| ||||| |||||    
T  7160 ttcataggtacttctttaacaacacaggggtagcagacaactcaacaac---ttaacaactcatagatgacaattc 7232  T

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Target: scaffold0073 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 56574 - 56638
Alignment:
Q  201 aagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggatgataa 268  Q
    ||||||||| ||||| || |||||||||||||||||| ||||||   || ||||||||||||| ||||    
T  56574 aagtacttcgttaacaactcatggatagaagacaacttaacaac---ttgacaactcatggataataa 56638  T

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Target: scaffold0359 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 15118 - 15177
Alignment:
Q  201 aagtacttcattaactacacatggatagaagacaactcaacaacaatttaacaactcatggat 263  Q
    ||||||||| ||||| || |||||||||||||||||| ||||||   || |||||||||||||    
T  15118 aagtacttcgttaacaactcatggatagaagacaacttaacaac---ttgacaactcatggat 15177  T

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Target: scaffold0166 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 10468 - 10420
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  10468 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 10420  T

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Target: scaffold0141 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 14815 - 14767
Alignment:
Q  196 ttcataagtacttcattaactacacatggatagaagacaactcaacaac 244  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  14815 ttcataggtacttctttaacaacacatgggtagaagacaactcgacaac 14767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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