View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7182_high_3 (Length: 556)
Name: NF7182_high_3
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_high_3 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 10 - 539
Target Start/End: Complemental strand, 29569430 - 29568901
Alignment:
| Q |
10 |
attatactcacatgtttcaaagctagcgtaactgaaaccgtcttctggagtaacatgaattgtagaaacagcagctccttctacagaattcattgaatat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569430 |
attatactcacatgtttcaaagctagcgtaactgaaaccgtcttctggagtaacatgaattgtagaaacagcagctccttctacagaattcattgaatat |
29569331 |
T |
|
| Q |
110 |
ccacacgggtcaaaatcaaaatcacttatttcagagtccggaagaatatttctgataccggaattcgcagtcatcaggaatgctgaactagactgttctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569330 |
ccacacgggtcaaaatcaaaatcacttatttcagagtccggaagaatatttctgataccggaattcgcagtcatcaggaatgctgaactagactgttctt |
29569231 |
T |
|
| Q |
210 |
tgtagaaaaccgatgctttctctttgtctaacccagtcatgcacatctccagagtgtaaactgagtcgaataagctcacagacttcgcagcagcagagta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569230 |
tgtagaaaaccgatgctttctctttgtctaacccagtcatgcacatctccagagtgtaaactgagtcgaataagctcacagacttcgcagcagcagagta |
29569131 |
T |
|
| Q |
310 |
aacatgccatttttgtgtgctgtctgagccacccaaaacataagccacgcttcctgttccaagcttcgcaaagtagctatcaaggactgctacttcctcg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569130 |
aacatgccatttttgtgtgctgtctgagccacccaaaacataagccacgcttcctgttccaagcttcgcaaagtagctatcaaggactgctacttcctcg |
29569031 |
T |
|
| Q |
410 |
gagaagctgcgatgaggaaaggactgagcacttggaaaagtgaaacttccacgggtgtatcttaccgatcgaacagttagtccaagcgcctcggatagct |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569030 |
gagaagctgcgatgaggaaaggactgagcacttggaaaagtgaaacttccacgggtgtatcttaccgatcgaacagttagtccaagcgcctcggatagct |
29568931 |
T |
|
| Q |
510 |
tcaatatcggtgggattgaaagcagcaatt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29568930 |
tcaatatcggtgggattgaaagcagcaatt |
29568901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 26 - 468
Target Start/End: Complemental strand, 4942 - 4500
Alignment:
| Q |
26 |
tcaaagctagcgtaactgaaaccgtcttctggagtaacatgaattgtagaaacagcagctccttctacagaattcattgaatatccacacgggtcaaaat |
125 |
Q |
| |
|
|||||||| || |||||||| || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| ||||| || ||||||| |
|
|
| T |
4942 |
tcaaagcttgcataactgaacccatcttctggagtaacatgaatggtagaaacagcagcaccctcaacagaattcattgaataaccacaaggttcaaaat |
4843 |
T |
|
| Q |
126 |
caaaatcacttatttcagagtccggaagaatatttctgataccggaattcgcagtcatcaggaatgctgaactagactgttctttgtagaaaaccgatgc |
225 |
Q |
| |
|
|||| |||| ||||||||| | |||||||| || ||||| || || ||| |||||||| | |||||| || || |||||| |||||||||| || |
|
|
| T |
4842 |
caaagtcacatatttcagaatttggaagaattttcctgatgccagagttcacagtcatcttggcagctgaatctgattgatctttgaagaaaaccgaagc |
4743 |
T |
|
| Q |
226 |
tttctctttgtctaacccagtcatgcacatctccagagtgtaaactgagtcgaataagctcacagacttcgcagcagcagagtaaacatgccatttttgt |
325 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| || ||||| || |||||| | |||||| || | |||| ||||||||||||||||| || || |
|
|
| T |
4742 |
tttctctctgtctaagccagtcatgcacatctcgagtgtgtagacagagtcgtttgggctcacggaatctgcagaggcagagtaaacatgccaattctgg |
4643 |
T |
|
| Q |
326 |
gtgctgtctgagccacccaaaacataagccacgcttcctgttccaagcttcgcaaagtagctatcaaggactgctacttcctcggagaagctgcgatgag |
425 |
Q |
| |
|
| || || ||||||| || ||||||| ||| |||| |||||||| ||||||||| ||| ||||| || ||||| ||||| ||| |||||||| |
|
|
| T |
4642 |
gcttcatcggatccacccataatataagccgtgctgcctgacccaagctttccaaagtagccatcgaggacagccacttcttcggaaaagtggcgatgag |
4543 |
T |
|
| Q |
426 |
gaaaggactgagcacttggaaaagtgaaacttccacgggtgta |
468 |
Q |
| |
|
| || ||||| |||| |||||| ||||||| || |||||||| |
|
|
| T |
4542 |
ggaaagactgggcaccaggaaaaatgaaactgcctcgggtgta |
4500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 478
Target Start/End: Original strand, 5903040 - 5903140
Alignment:
| Q |
378 |
caaagtagctatcaaggactgctacttcctcggagaagctgcgatgaggaaaggactgagcacttggaaaagtgaaacttccacgggtgtatcttaccga |
477 |
Q |
| |
|
|||| ||||| ||||| || || ||||||||||||||||| |||||||| || || ||||| | || ||| |||| ||||| || |||||||| ||||| |
|
|
| T |
5903040 |
caaaatagctgtcaagaacagcaacttcctcggagaagcttcgatgagggaatgattgagctccagggaaaatgaagcttccgcgagtgtatctcaccga |
5903139 |
T |
|
| Q |
478 |
t |
478 |
Q |
| |
|
| |
|
|
| T |
5903140 |
t |
5903140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University