View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7182_high_8 (Length: 330)
Name: NF7182_high_8
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 36 - 313
Target Start/End: Original strand, 37756269 - 37756546
Alignment:
| Q |
36 |
agaacctgtgacgtataacttcttccatattgattttttattttggtgtatatataacaccatttgttatatgatcataagtcatttgtgtccttaaatg |
135 |
Q |
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| T |
37756269 |
agaacttgtgacgtataacttcttccatattgattttttattttggtgtatatataacaccatttgttatatgatcataagtcatttgtgttcttaaatg |
37756368 |
T |
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| Q |
136 |
atgcatcatcctagtggatcatgactgctgctggcactcccatgccactagcaggcattgggtctgtctccacaactatcttgtcttctttactgatgtt |
235 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37756369 |
atgcatcatccaagtggatcatgactgctgctggcactcccatgccactagcaggcattgggtctgtctccacaactatcttgtcttctttactgatgtt |
37756468 |
T |
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| Q |
236 |
tactatattcctaacctcactttgagtcttattagggatcttggcacaacaattagagtgcatgttagttttgttatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37756469 |
tactatattcctaacctcactttgagtcttattagggatcttggcacaacaattagagtgcatgttagttttgttatt |
37756546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 47632736 - 47632629
Alignment:
| Q |
156 |
atgactgctgctggcactcccatgccactagcaggcattgggtctgtctccacaactatcttgtcttctttactgatgtttactatattcctaacctcac |
255 |
Q |
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|||||||||| |||||| || |||||| ||||||||||||| || ||||| || ||| |||||| ||| | || ||||||| |||||||||| || || |
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| T |
47632736 |
atgactgctgatggcacccctatgccattagcaggcattggttcggtctctacctctaacttgtc-tctct-ctaatgtttatcatattcctaaacttac |
47632639 |
T |
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| Q |
256 |
tttgagtctt |
265 |
Q |
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| T |
47632638 |
tttgagtctt |
47632629 |
T |
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