View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7182_low_11 (Length: 350)
Name: NF7182_low_11
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 15168936 - 15169258
Alignment:
| Q |
18 |
ttggcaagtgaagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15168936 |
ttggcaagtgaagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattac |
15169035 |
T |
|
| Q |
118 |
gttcaatggaaggcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaacaatggtaaatgtaagtgctct |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
15169036 |
gttcaatggaaggcactagtttatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgatttacaattgtaaatgtaagtgctct |
15169135 |
T |
|
| Q |
218 |
caaccaagttgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatattt |
317 |
Q |
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||||||||| || |||||||| |||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||| |||| |
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| T |
15169136 |
caaccaagtggtgcctgattttggtaagcttgcaacaacaatatcactatctttggcttgaaaatgattttgaaaagagattataggttggatcaaattt |
15169235 |
T |
|
| Q |
318 |
gatggacaccaaaaacattgaaa |
340 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
15169236 |
gatggacaccaaaaacattgaaa |
15169258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 15076739 - 15076417
Alignment:
| Q |
18 |
ttggcaagtgaagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattac |
117 |
Q |
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||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||| |
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| T |
15076739 |
ttggcaagtgaaggaaatggaatgtgagtcccaaaaagccttggttcaattatttttgatagaggaattcggtctttgatatcagcagcataaagattac |
15076640 |
T |
|
| Q |
118 |
gttcaatggaaggcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaacaatggtaaatgtaagtgctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |
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| T |
15076639 |
gttcaatggaaggcactagttcatgtataatggatttaagtaatggatgattctcaaaagagtattgattgcgattaacaattgtaaatgtaaatgctct |
15076540 |
T |
|
| Q |
218 |
caaccaagttgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatattt |
317 |
Q |
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||||||||| || |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15076539 |
caaccaagtggtgcctgattttggtaagctagcaacaacaatatcattgtgtttggcttggaaattgttttgaaaagagattataggttggatcatattt |
15076440 |
T |
|
| Q |
318 |
gatggacaccaaaaacattgaaa |
340 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
15076439 |
gatggacaccaaaaacattgaaa |
15076417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 15171774 - 15172079
Alignment:
| Q |
18 |
ttggcaagtgaagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattac |
117 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||| |
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| T |
15171774 |
ttggcaagtgaaggaaatggaatgtgagtcccaaaaagccttggttcaattatttttgatagaggaattcggtctttgatatcagcagcataaagattac |
15171873 |
T |
|
| Q |
118 |
gttcaatggaaggcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaacaatggtaaatgtaagtgctct |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
15171874 |
gttcaatggaaggcactagtttatgtataatggatttaagtaatgaatgattctcaaaagagtattgattgcgatttacaattgtaaatgtaagtgctct |
15171973 |
T |
|
| Q |
218 |
caaccaagttgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatattt |
317 |
Q |
| |
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|||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15171974 |
caaccaagttgtgcctgattttgg-----------------tatcattgtgtttggcttggaaattgttttgaaaagagattataggttggatcatattt |
15172056 |
T |
|
| Q |
318 |
gatggacaccaaaaacattgaaa |
340 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
15172057 |
gatggacaccaaaaacattgaaa |
15172079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 127 - 346
Target Start/End: Original strand, 4506773 - 4506995
Alignment:
| Q |
127 |
aaggcactagttcatgtataatggatttaagtaatggatgattctcaaagga---gtattgattgcgattaacaatggtaaatgtaagtgctctcaacca |
223 |
Q |
| |
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||||||||||||||||| | || |||||||||||||||||| || ||||| | | |||| ||||||||||||| |||||| |||||| ||||||| |
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| T |
4506773 |
aaggcactagttcatgtgaattgaatttaagtaatggatgatcttctaaggaagagaaatgatgacgattaacaatggcaaatgtgagtgctttcaacca |
4506872 |
T |
|
| Q |
224 |
agttgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatgga |
323 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| | |||||||||| |
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| T |
4506873 |
agttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgattttgaaaagagtttataggttggattaaatttgatgga |
4506972 |
T |
|
| Q |
324 |
caccaaaaacattgaaacaaata |
346 |
Q |
| |
|
|||||||||| |||||| ||||| |
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| T |
4506973 |
caccaaaaaccttgaaaaaaata |
4506995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 249 - 350
Target Start/End: Complemental strand, 15164456 - 15164355
Alignment:
| Q |
249 |
gcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaaacattgaaacaaatata |
348 |
Q |
| |
|
|||||||||| | |||||||||| ||||| |||| ||||||| |||| ||||||||||||| | ||||||| ||||||||||| |||||| | ||||| |
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| T |
15164456 |
gcaacaacaacagcattgtctttagcttgaaaatcattttgaacagagtttataggttggattaaatttgatcaacaccaaaaaccttgaaaaagatata |
15164357 |
T |
|
| Q |
349 |
aa |
350 |
Q |
| |
|
|| |
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|
| T |
15164356 |
aa |
15164355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 13033225 - 13033142
Alignment:
| Q |
248 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
331 |
Q |
| |
|
||||||||||||||||||||||||||| || || || |||||||||| | | | || |||||| | || ||||||||||||||| |
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|
| T |
13033225 |
tgcaacaacaatatcattgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaa |
13033142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 15066556 - 15066473
Alignment:
| Q |
248 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
331 |
Q |
| |
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|||||| ||||||||| | |||||||| || ||||| |||||||||||| | | || |||||| | | |||||||||||||||| |
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|
| T |
15066556 |
tgcaactacaatatcactatctttggcatgaaaattattttgaaaagagttcacagattggataagagttgatggacaccaaaa |
15066473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 15214887 - 15214970
Alignment:
| Q |
248 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
331 |
Q |
| |
|
|||||||||||||||| ||||||| || || ||||| |||||||||||| | | || ||| || | | |||||||||||||||| |
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| T |
15214887 |
tgcaacaacaatatcactgtctttagcatgaaaattattttgaaaagagttcacagattgaataagagttgatggacaccaaaa |
15214970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 14999981 - 14999896
Alignment:
| Q |
248 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaaac |
333 |
Q |
| |
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|||||||| || |||| | ||||||| ||| ||||| ||| |||||||| ||||||||||||| | ||| |||||||||||||| |
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| T |
14999981 |
tgcaacaataacatcactatctttggtttgaaaattatttcgaaaagagtttataggttggattaatattggtggacaccaaaaac |
14999896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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