View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7182_low_13 (Length: 327)
Name: NF7182_low_13
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 44836904 - 44837204
Alignment:
| Q |
19 |
attgtatcagactttgactttcttgaaagatatcgatagtaattagcagttaatttaatatacttgtaaacattaaaaccagatgctaagaaacatctaa |
118 |
Q |
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| T |
44836904 |
attgtatcagactttgactttcttgaaagatatcgatagtaattagcagttaatttaatatacttgtaaacattaaaaccagatgctaagaaacatctaa |
44837003 |
T |
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| Q |
119 |
taatccaattgcacttcacacacaagggtttgcaactcgcaatttgtaaaaataggtcaatcaaattaaaatgttacaataacttaattgagtgtcaagg |
218 |
Q |
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| T |
44837004 |
taatccaattgcacttcacacacaagggtttgcaactcgcaatttgtaaaaataggtcaatcaaattaaaatgttacaataacgtaattgagtgtcaagg |
44837103 |
T |
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| Q |
219 |
accaatacttcaaagttacaaacaacattctgagttccaaattcttaaattttaaaaagttatcatttcggcactattcattttgtctttctatattctt |
318 |
Q |
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| T |
44837104 |
accaatacttcaaagttacaaacaacattctgagttccaaatttttaaattttaataagttattatttcagcactattcattttgtctttctattttctt |
44837203 |
T |
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| Q |
319 |
c |
319 |
Q |
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| T |
44837204 |
c |
44837204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 44848600 - 44848736
Alignment:
| Q |
92 |
taaaaccagatgctaagaaacatctaataatccaattgcacttcacacacaagggtttgcaactcgcaatttgtaaaaataggtcaatcaaattaaaatg |
191 |
Q |
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||||| ||| |||| ||||| |||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44848600 |
taaaatcagctgctgagaaatatctaataatccaattgcaccccatacagaagggtgtgcaactcgcaatttgtaaaaataggtcaatcaaattaaaatc |
44848699 |
T |
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| Q |
192 |
ttacaataacttaattgagtgtcaaggaccaatactt |
228 |
Q |
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| T |
44848700 |
ttgcaataccgcaagtgagtgtcaaggagcaatactt |
44848736 |
T |
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