View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7182_low_17 (Length: 240)
Name: NF7182_low_17
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 8349975 - 8350188
Alignment:
| Q |
11 |
caatgattagcggtgtcgacgtgtcccgtgtctgtgtttgtatctgtgcttcataacttaaaaaacatgagcatgagtatgaagagattacttactgatt |
110 |
Q |
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| T |
8349975 |
caatgatcaacggtgtcgacgtgtcccgtgtctgtgttcgggtccgtgcttcatagcttaaaaaacatgagcatgagtatgaagagattacttactgatt |
8350074 |
T |
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| Q |
111 |
gatgagattatagaccctaaggatcttatgaagaagatagttataaaggcttcccaagacaccaccaatgattccaataatagcaacaggaacaatatcc |
210 |
Q |
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| T |
8350075 |
gatgagattatagaccctaaggatcttatgaagaagatagttataaaggcttcccaagacaccaccaatgattccaataatagcaacaggaacaatatcc |
8350174 |
T |
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| Q |
211 |
ataacattataact |
224 |
Q |
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|||||||||||||| |
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| T |
8350175 |
ataacattataact |
8350188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 10398256 - 10398140
Alignment:
| Q |
101 |
cttactgattgatgagattatagaccctaaggatcttatgaagaagatagttataaaggcttcccaagacaccaccaatgattccaataatagcaacagg |
200 |
Q |
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| T |
10398256 |
cttactgattgattagattgtagagtctgaggaccttgtgtagaagatgattataaaggcttcccaataatccacctatgattccaatgactgcaacagg |
10398157 |
T |
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| Q |
201 |
aacaatatccataacat |
217 |
Q |
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| T |
10398156 |
gaggatatccatcacat |
10398140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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