View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7182_low_3 (Length: 566)
Name: NF7182_low_3
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 283 - 539
Target Start/End: Original strand, 48354288 - 48354544
Alignment:
| Q |
283 |
tcatgaacacaagaaacagtcctcagattcagaagagcctgtctcggcagtcatcaaagaattctaaggcaaagcaagagccacttagtccgttttctgg |
382 |
Q |
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| T |
48354288 |
tcatgaacacaagaaacagtcctcagattcagaagagcctgtctcggcagtcatcgaagaattctaaggcaaagcaagagccacttagtccgttttctgg |
48354387 |
T |
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| Q |
383 |
tggatgctgccgaggcttcaccagcgtgaagactgtggcatccaccacatcaaccttgcaacaacatcagctgcaacaacgttatgagagtttggaagtg |
482 |
Q |
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| T |
48354388 |
tggatgctgccgaggcttcaccagcgtgaagactgtggcatccaccacatcaaccttgcaacaacatcagctacaacaacgttatgagagtttggaagtg |
48354487 |
T |
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| Q |
483 |
aaggtatatatttttctttgtatattaatattaatgtatgtcaaactaaaatttacg |
539 |
Q |
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| T |
48354488 |
aaggtatatattttactttgtatattaatattaatgtatgtcaaactaaaatttacg |
48354544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 48354024 - 48354249
Alignment:
| Q |
20 |
ccatgggcaatttgcattccaatcagcacgttgatttcttcaatgttcatcacaaagtccgtctaaattgtcgtgtgctattccggcatacattatacca |
119 |
Q |
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| T |
48354024 |
ccatgggcaatttgcattccaatcagcacgttgatttcttcaatgttcatcacaaagtccgtctaaattgtcgtgtgctattccggcatacattatacca |
48354123 |
T |
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| Q |
120 |
cnnnnnnntaaagtacaaaggctaaggcactgactccatttatgttgcagcatgtcctccacgactcaataatatattgcctcctcctacgagaaattga |
219 |
Q |
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| T |
48354124 |
caaaaaaataaagtacaaaggctaaggcactgactccatttatgttgcagcatgtcctccacgactcaataatatattgcctcctcctacgagaaattga |
48354223 |
T |
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| Q |
220 |
acataacattaatttcggaggatact |
245 |
Q |
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| T |
48354224 |
acataacattaatttcggaggatact |
48354249 |
T |
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