View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7182_low_7 (Length: 391)
Name: NF7182_low_7
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_low_7 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 112 - 391
Target Start/End: Original strand, 7278608 - 7278890
Alignment:
| Q |
112 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattct---ttcacacatttaccctcgctaccatcctc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
7278608 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7278707 |
T |
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| Q |
209 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7278708 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcaccatcctcattcaccaaa |
7278807 |
T |
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| Q |
309 |
gcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacaca |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278808 |
gcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacaca |
7278890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 112 - 391
Target Start/End: Complemental strand, 7375231 - 7374949
Alignment:
| Q |
112 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattctt---tcacacatttaccctcgctaccatcctc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
7375231 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7375132 |
T |
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| Q |
209 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375131 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaa |
7375032 |
T |
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| Q |
309 |
gcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacaca |
391 |
Q |
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| T |
7375031 |
gcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacaca |
7374949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7278497 - 7278549
Alignment:
| Q |
1 |
tcttcttcacatcctcattgctctcctcattccccaaagcttcaaatttttca |
53 |
Q |
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| T |
7278497 |
tcttcttcacatcctcattgttctcctcattccccaaagcttcaaatttttca |
7278549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7375342 - 7375290
Alignment:
| Q |
1 |
tcttcttcacatcctcattgctctcctcattccccaaagcttcaaatttttca |
53 |
Q |
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| T |
7375342 |
tcttcttcacatcctcattgttctcctcattccccaaagcttcaaatttttca |
7375290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 7278543 - 7278593
Alignment:
| Q |
227 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
277 |
Q |
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| T |
7278543 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7278593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 7375296 - 7375246
Alignment:
| Q |
227 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
277 |
Q |
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| T |
7375296 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7375246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 7278520 - 7278576
Alignment:
| Q |
294 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
350 |
Q |
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||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
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| T |
7278520 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7278576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 7375319 - 7375263
Alignment:
| Q |
294 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
350 |
Q |
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| T |
7375319 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7375263 |
T |
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