View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7182_low_8 (Length: 391)
Name: NF7182_low_8
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 36999252 - 36999618
Alignment:
| Q |
17 |
aaaaataataataatcaggcatataccatgattaattacatttgattnnnnnnnn--tcattttatgtgtaactgaatttgtttaggaacatctcttaca |
114 |
Q |
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| T |
36999252 |
aaaaataataataatcaggcatataccatgattaattacatttgattaaaaaaaaaatcattttatgtgtaactgaatttgtttaggaacatatcttaca |
36999351 |
T |
|
| Q |
115 |
aaaaattaacaatttatttagaaaagaaaatataagttgatactaccctattagtaaaaataagacaaattaaaggaataccttctcttgaagggtggcc |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999352 |
aaaaattaacaatttattcagaaaagaaaatataagttgatactaccctattagtaaaaataagacaaattaaaggaataccttctcttgaagggtggcc |
36999451 |
T |
|
| Q |
215 |
ttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttccttaatggtctctccagctttcttagctccctgcatttttaatttta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999452 |
ttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttccttaatggtctctccagctttcttagctccctgcatttttaatttta |
36999551 |
T |
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| Q |
315 |
agatttcaacttcttcaacaatcnnnnnnnttcaattcc-ttttttatgagattgcttcgttttctt |
380 |
Q |
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||||||||||||||| ||| ||| ||||||||| |||||| |||||||||||||||||||| |
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| T |
36999552 |
agatttcaacttctttaacgatcaaaaaaattcaattcctttttttttgagattgcttcgttttctt |
36999618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 36989119 - 36989236
Alignment:
| Q |
181 |
aaattaaaggaat-accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttccttaatggtctc |
279 |
Q |
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|||| |||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
36989119 |
aaatgaaaggaattaccttctcctgaagagtggccttggtcttttccatgccagatttggctgaagcaccaatgttggcagctgtctccttaatggactc |
36989218 |
T |
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| Q |
280 |
tccagctttcttagctcc |
297 |
Q |
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||| | |||||| ||||| |
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| T |
36989219 |
tcctgttttctttgctcc |
36989236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 36994860 - 36994977
Alignment:
| Q |
181 |
aaattaaaggaat-accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttccttaatggtctc |
279 |
Q |
| |
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|||| |||||||| ||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
36994860 |
aaatgaaaggaattaccttctcttgaaatgtggccttggttttttccatgccagatttggctgaagcaccaatgttggcagctgtctccttaatggactc |
36994959 |
T |
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| Q |
280 |
tccagctttcttagctcc |
297 |
Q |
| |
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||| | |||||| ||||| |
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| T |
36994960 |
tcctgttttctttgctcc |
36994977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 22953883 - 22953995
Alignment:
| Q |
194 |
accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttccttaatggtctctccagctttcttag |
293 |
Q |
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||||| ||||| | |||||| ||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| | |||||| | | |
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| T |
22953883 |
accttttcttggacggtggctttggtcttctccaagccagacttggcagatgcaccaatgttggctgctgtttccttaatggtctcaactgctttccttg |
22953982 |
T |
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| Q |
294 |
ctccctgcatttt |
306 |
Q |
| |
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|| |||||||||| |
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| T |
22953983 |
ctgcctgcatttt |
22953995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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