View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7182_low_9 (Length: 388)
Name: NF7182_low_9
Description: NF7182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7182_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 30136445 - 30136200
Alignment:
| Q |
20 |
catattccattctaatctttacactttctttttctcacatattcaaataaaaatcccgcgacccttctcttcattatatcaaaattcaaatctttatatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30136445 |
catattccattctaatctttacactttctttttctcacatattcaaataaaaatcccgcgacccttctcttcattatatcaaaattcaaatctttatatt |
30136346 |
T |
|
| Q |
120 |
catattcatatactttagattcttccattgctttttatcattggagaatttcaaaatccaaaagtataaagaaaaagaaccattttagtttcnnnnnnnn |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30136345 |
catattcatatactttagattcttccattgctttttatcattggagaatttcaaaatccaaaagtataaagaaaaagaaccattttggtttctttttttt |
30136246 |
T |
|
| Q |
220 |
ccttctactaaatcatataaacatgaagctcttaacattatcttat |
265 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30136245 |
tcttcttctaaatcatataaacatgaagctcttaacattatcttat |
30136200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 30136169 - 30136096
Alignment:
| Q |
299 |
aactttagctttgactcaacattttgcagctcaaaaactgttgctgcagggtgtttcacaaccatttttcatag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30136169 |
aactttagctttgactcaacattttgcagctcaaaaactgttgctgcagggtgtttcacaaccatttttcatag |
30136096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University