View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7183_high_3 (Length: 310)
Name: NF7183_high_3
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7183_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 32376429 - 32376703
Alignment:
| Q |
16 |
gtttacatagaaatttgagggatcatctcaaacaatgtagtgatacatagcaatcaagaagaatcatttccctcttttgctttcagagactatagagatt |
115 |
Q |
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| T |
32376429 |
gtttacatagaaatttaagggatcatctcaaacaatgtagttatacataacaatcaagaagaatcatttccctcttttactttcagagactaaagagctt |
32376528 |
T |
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| Q |
116 |
ctctttgtattactaatgctattggtggattcattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtcttccgt |
215 |
Q |
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| T |
32376529 |
ctctttgtactactaatgctattgggggattcattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtcttccgt |
32376628 |
T |
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| Q |
216 |
agccgaagattgatcgcgggaatcaatttctttcatggataacttatcttccaagagatcataactgttcccagt |
290 |
Q |
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| T |
32376629 |
agccgaagattgatcgcgggaatcaatttctttcatggataacttatcttccaagatatcataactattcccagt |
32376703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 32364728 - 32365018
Alignment:
| Q |
16 |
gtttacatagaaatttgagggatcatctcaaacaatgtagtgatacatagcaatcaagaagaatcatttccctcttttgctttcagagacta---ta-ga |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || || || |
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| T |
32364728 |
gtttacatagaaatttgagggatcatctcaaacaatgtagtgatacataacaatcaagaagaatcatttccctcttttgctttcagagaataaggtagga |
32364827 |
T |
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| Q |
112 |
gattctctttgtattactaatgctattggtggattcattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtct- |
210 |
Q |
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| T |
32364828 |
gcttctctttgtattaataatgctattggtggattcatcgtttcatctttacgtcgttcaagagaagaacttgtgtcggatttgcttgatactacgtctt |
32364927 |
T |
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| Q |
211 |
-tcc----------gtagccgaagattgatcgcgggaatcaatttctttcatggataacttatcttccaagagatcataactgttcccagt |
290 |
Q |
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| T |
32364928 |
gtccagccaaacatgaaaccgaagattgatcgcgagtatcaatttctttcatggataacttatcttccaagatatcataactattcccagt |
32365018 |
T |
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