View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7183_high_6 (Length: 206)
Name: NF7183_high_6
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7183_high_6 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 7475236 - 7475042
Alignment:
| Q |
12 |
acatcattgatttcaaagttgtgaaactccatgtcaagtattacgagaagaaacattatatttcatgggcggaagtttatagtctaggtactaaatcatg |
111 |
Q |
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| T |
7475236 |
acatcattgatttcaaagttgtgaaactccatgtcaagtattacgagaagaaacattatatttcatgggcggaagtttatagtctaggtactaaatcatg |
7475137 |
T |
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| Q |
112 |
gactcctaccctacatgctcctccttttactatcatcacaccaaaaattccctccaaatataacaatcttgttaacggcatttatcattggatta |
206 |
Q |
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| T |
7475136 |
gactcctaccctacatgctcctccttttactatcatcacacgaaaaattccctccaaatataacaatcttgttaacggcatttatcattggatta |
7475042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 6943999 - 6944128
Alignment:
| Q |
80 |
gcggaagtttatagtctaggtactaaatcatggactcctaccctacatgctcctcct---tttactatcatcacaccaaaaattccctccaaatataaca |
176 |
Q |
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| T |
6943999 |
gcggaagtttatagtctaatcactaaatcatggacccctacccgacatcctcctcctccttttactatcatcacacgtcaatgtcccttcaaatataaca |
6944098 |
T |
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| Q |
177 |
atcttgttaacggcatttatcattggatta |
206 |
Q |
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| T |
6944099 |
ctcttgttaacggcgtttatcattggatta |
6944128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 7495535 - 7495390
Alignment:
| Q |
61 |
gaaacattatatttcatgggcggaagtttatagtctaggtactaaatcatggactcctaccctacatgctcctccttttactatcatcacaccaaaaatt |
160 |
Q |
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| T |
7495535 |
gaaacattatatttccttcgcggaagtttataatctaagtactaaattatggacccctactcaacatcctcatcctttaactatcatcacgcgtcaacgt |
7495436 |
T |
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| Q |
161 |
ccctccaaatataacaatcttgttaacggcatttatcattggatta |
206 |
Q |
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| T |
7495435 |
ccttctaaatacaacactcttgttaatggtgtttatcattggatta |
7495390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 7873385 - 7873422
Alignment:
| Q |
169 |
atataacaatcttgttaacggcatttatcattggatta |
206 |
Q |
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| T |
7873385 |
atataacactcttgttaacggcgtttatcattggatta |
7873422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 13877851 - 13877811
Alignment:
| Q |
166 |
caaatataacaatcttgttaacggcatttatcattggatta |
206 |
Q |
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| T |
13877851 |
caaatacaacattcttgttaatggcatttatcattggatta |
13877811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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