View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7183_low_1 (Length: 579)
Name: NF7183_low_1
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7183_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 10 - 569
Target Start/End: Complemental strand, 20019184 - 20018625
Alignment:
| Q |
10 |
agatggacatcaagatgacagtaacaaagtatgtttatcgattattttttatataaatatttggtttatgaatataatgtgctctgcacttgcaatataa |
109 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20019184 |
agatggagatcaagatgacagtaacaaagtatgtttatcgattagtttttatataaatatttggtttatgaatataatgtgctctgcagttgcaatataa |
20019085 |
T |
|
| Q |
110 |
aattttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaata |
209 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20019084 |
aattttcggcaaaaaagtctaattaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaata |
20018985 |
T |
|
| Q |
210 |
tggatatttcttttgctatcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaatgactagtaccaaacacatgaactgcatt |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20018984 |
tggatatttcttttgctatcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaatgactagtaccaaacacatgaactgcatt |
20018885 |
T |
|
| Q |
310 |
ttatgtggctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccat |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20018884 |
ttatgtggctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgacctt |
20018785 |
T |
|
| Q |
410 |
gatgttgatactcaactaaaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaagnnnnnnnnngtggattagctaaactagagga |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20018784 |
gatgttgatactcaactaaaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaagtttttttttgtggattagctaaactagagga |
20018685 |
T |
|
| Q |
510 |
acaatccgtcttttattaagataaattgtaaaatcccttttgaatcattatgatgtccat |
569 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
20018684 |
acaatccgtcttttattaagataacttgtaaaatcccttttgaatcattatgatgtccat |
20018625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 114 - 380
Target Start/End: Complemental strand, 20000280 - 20000010
Alignment:
| Q |
114 |
ttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatgga |
213 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| | |||||| |
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|
| T |
20000280 |
ttcggcaaaaaagtctaattacatcctttctgtgacaggattctcctttaagtaagaagcagaaatctaacataatttctgaggatggtaagattatgga |
20000181 |
T |
|
| Q |
214 |
tatt--tcttttg-ctatcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaatgactagtaccaaaca-catgaactgcatt |
309 |
Q |
| |
|
| || ||||||| ||||| |||||||||| ||||||| |||| |||| |||||||||||||| |||||||||||||||||||| |||| ||||| | |
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|
| T |
20000180 |
tttttctcttttgactatcatataataaaaattcatgttttattttgatcaataatttgaatgttcagaatgactagtaccaaacaccatggactgccgt |
20000081 |
T |
|
| Q |
310 |
ttatgtggctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttgggga |
380 |
Q |
| |
|
| |||||||||||||||||||||| || || ||||||||||||||||||| ||||| |||||||| |||| |
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|
| T |
20000080 |
tcatgtggctaacagtcttgcatcttgtttctttgtagaaaatccatctgggctggctcagaatttaggga |
20000010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 115 - 478
Target Start/End: Complemental strand, 20029069 - 20028704
Alignment:
| Q |
115 |
tcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatggat |
214 |
Q |
| |
|
|||| ||||| || ||| || ||||||| | |||||||| ||||||| ||| | |||||||| ||||||||| |||| || |||||||| | ||||||| |
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|
| T |
20029069 |
tcggaaaaaatgtttaattacatcctttctttggcaggactctccttcaagtatgaagcagagatctaacattattattggtgatggtaagattatggat |
20028970 |
T |
|
| Q |
215 |
atttcttttgct-atcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaa--tgactagtaccaaacacatgaactgcatttt |
311 |
Q |
| |
|
||||||||| | |||||||||||| | |||||| || | | || ||||||||||| ||| |||| |||||| ||| |||||||||||||| | || |
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|
| T |
20028969 |
ttttcttttgattatcttataataagaattcatgctttttttt-atctataatttgaaggttcagaaggtgactaatacaaaacacatgaactgaagttc |
20028871 |
T |
|
| Q |
312 |
atgtggctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatga |
411 |
Q |
| |
|
|| || |||||| |||||| | || || ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||| ||| |
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|
| T |
20028870 |
atatgactaacaatcttgctccttgtttctttgtagaaaatccatctgggctggctcagaatttggtgacagtcgtcaaggaatctgacactgacattga |
20028771 |
T |
|
| Q |
412 |
tgttgatactcaactaaaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaag |
478 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||| |
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|
| T |
20028770 |
tgttgatgctcaactaaaaaatatggtattataatgttttatgcattttggtagcataaatgaaaag |
20028704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 292 - 478
Target Start/End: Complemental strand, 20009453 - 20009267
Alignment:
| Q |
292 |
aaacacatgaactgcattttatgtggctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaag |
391 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||| | || || ||||||||||||||||||| |||| |||||||| ||||||| ||||||| |
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|
| T |
20009453 |
aaacacatgaactgcagttcatctggctaacagtcttgcaccttgtttctttgtagaaaatccatctgggatggctcagaatttagggacagtcgtcaag |
20009354 |
T |
|
| Q |
392 |
gaatctgacactgaccatgatgttgatactcaactaaaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaag |
478 |
Q |
| |
|
|||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| |||||||||||| |
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|
| T |
20009353 |
gaatctgacaatgacattgatgttgatgctcaactaaaaaatatggtattataaagttttatgtgctttcgtagcataaatgaaaag |
20009267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 20000361 - 20000285
Alignment:
| Q |
10 |
agatggacatcaagatgacagtaacaaagtatgtttatcgattattttttatataaatatttggtttatgaatataa |
86 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
20000361 |
agatggagatcaagatgacagtaacaaagtatgtttatcgattattttttacataaatatgtggttgatgaatataa |
20000285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 20029242 - 20029185
Alignment:
| Q |
10 |
agatggacatcaagatgacagtaacaaagtatgtttatcgattattttttatataaat |
67 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20029242 |
agatggagatcaagatgatagtaacaaagtatgtttatcgattaatttttatataaat |
20029185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 20009618 - 20009500
Alignment:
| Q |
104 |
atataaaattttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggta |
203 |
Q |
| |
|
||||||||||| || |||||| |||||| || ||||||| | | |||||||||||||||||| | |||| | | |||||||||||||| || ||||||| |
|
|
| T |
20009618 |
atataaaattt-cgacaaaaatgtctaattacatcctttctttagcaggattctcctttaagtatgaagaaaagatctaacatgattattggtgatggta |
20009520 |
T |
|
| Q |
204 |
aaaatatggatatttctttt |
223 |
Q |
| |
|
| | ||| ||| |||||||| |
|
|
| T |
20009519 |
agattatcgatttttctttt |
20009500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 20009774 - 20009698
Alignment:
| Q |
18 |
atcaagatgacagtaacaaagtatgtttatcgattattttttatataaatatttggtttatgaatataatgtgctctgc |
96 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| | |||| |||||| || ||||| |||||| ||||||| ||||| |
|
|
| T |
20009774 |
atcaagatgatagtaacgaagtatgtttatcgataaattttcatataa--atgtggttgatgaatgtaatgtgttctgc |
20009698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 120 - 461
Target Start/End: Original strand, 12573376 - 12573715
Alignment:
| Q |
120 |
aaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatggatatttc |
219 |
Q |
| |
|
|||||||||||| || ||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
12573376 |
aaaaaagtctaattacatcctttctgtggcagaattctcctttaactaagaagcataaatctaacatgattactgcggatggtaa-------gatttttc |
12573468 |
T |
|
| Q |
220 |
ttttgct-atcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaa--tgactagtaccaaacacatgaactgcattttatgtg |
316 |
Q |
| |
|
||||| | ||||||| |||||| ||||| | |||| ||||| ||||||||||||||| |||| ||| | || ||||| ||||||||| || | ||||| |
|
|
| T |
12573469 |
ttttgattatcttatgataaaaattcattttttattatgatctataatttgaatgttcagaaggtgaatggttccaaagacatgaactacagctcatgtg |
12573568 |
T |
|
| Q |
317 |
gctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatg---atg |
413 |
Q |
| |
|
|||||||| ||||||| || || ||||||||||| ||||||| ||||| |||||||||||||||| | ||||||||||||| | ||| || ||| |
|
|
| T |
12573569 |
actaacagttttgcatcttgtttccttgtagaaaattcatctggtctggctcagaatttggggacagtcatcaaggaatctgatgccgacattgttaatg |
12573668 |
T |
|
| Q |
414 |
ttgatactcaactaaaaaatatggtattataaagttttatgcgttttc |
461 |
Q |
| |
|
| ||| ||||||| |||||||||||||| | || |||||||||||||| |
|
|
| T |
12573669 |
tcgatgctcaacttaaaaatatggtattgt-aacttttatgcgttttc |
12573715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 12573201 - 12573280
Alignment:
| Q |
18 |
atcaagatgacagtaacaaagtatgtttatcgatt-attttttatataaatatttggtttatgaatataatgtgctctgc |
96 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || |||||||||||||| || ||| | |||||| ||| ||| ||||| |
|
|
| T |
12573201 |
atcaagatgacagtaacaaagtatgttgatcgtttaattttttatataaaaatgtgggtgatgaatgtaacgtgttctgc |
12573280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 563
Target Start/End: Original strand, 12573780 - 12573844
Alignment:
| Q |
499 |
aaactagaggaacaatccgtcttttattaagataaattgtaaaatcccttttgaatcattatgat |
563 |
Q |
| |
|
|||||||| ||| |||| || ||||| |||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
12573780 |
aaactagaagaataatcagttttttactaagataactagtaaaatctcttttgaatcattatgat |
12573844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 19000216 - 19000286
Alignment:
| Q |
114 |
ttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaac |
184 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||| ||||| ||| ||||| | ||||||||| |
|
|
| T |
19000216 |
ttcggcaaaaaagtctaattatatcatttttgtggcaggattttccttcaagaaagaatctaaaatctaac |
19000286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 564
Target Start/End: Complemental strand, 48300332 - 48300256
Alignment:
| Q |
488 |
gtggattagctaaactagaggaacaatccgtcttttattaagataaattgtaaaatcccttttgaatcattatgatg |
564 |
Q |
| |
|
|||||||||||||| || | ||||||| | ||| | |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
48300332 |
gtggattagctaaaatataagaacaattaatttttcactaagataacttgtaaaatctcttttgaatcattatgatg |
48300256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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