View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7183_low_10 (Length: 228)
Name: NF7183_low_10
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7183_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6988512 - 6988426
Alignment:
| Q |
1 |
tcaaaactagcacaattgaaagaaaaagtgaaaatagattcaaaccccacaatgaagccaactcttttgcttcaaaattacacccat |
87 |
Q |
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| T |
6988512 |
tcaaaactaacacaattgaaagaaaaagtgaaaataaattcaaaccccacaatgaagccagcacttttgcttcaaaattacacccat |
6988426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 6988352 - 6988297
Alignment:
| Q |
162 |
taaaatttctatatcaaccccatttaaaaacacagatcacatgacttatgagttat |
217 |
Q |
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| T |
6988352 |
taaaatttctatatcaaccccatttaaaaacacagatcacataacttatgagttat |
6988297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 6988818 - 6988777
Alignment:
| Q |
163 |
aaaatttctatatcaaccccatttaaaaacacagatcacatg |
204 |
Q |
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| T |
6988818 |
aaaatttctacatcaaccccattcataaacacagatcacatg |
6988777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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