View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7183_low_2 (Length: 445)

Name: NF7183_low_2
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7183_low_2
NF7183_low_2
[»] scaffold0003 (2 HSPs)
scaffold0003 (1-445)||(41677-42127)
scaffold0003 (1-445)||(35007-35457)
[»] chr6 (3 HSPs)
chr6 (1-445)||(27445231-27445681)
chr6 (1-318)||(20909316-20909632)
chr6 (1-318)||(20923764-20924080)
[»] chr8 (3 HSPs)
chr8 (1-318)||(42312430-42312746)
chr8 (181-217)||(8333302-8333338)
chr8 (181-217)||(15581194-15581230)
[»] chr1 (2 HSPs)
chr1 (1-299)||(41326214-41326511)
chr1 (1-71)||(47246912-47246982)
[»] chr7 (1 HSPs)
chr7 (189-318)||(11504728-11504856)
[»] chr3 (2 HSPs)
chr3 (113-212)||(50717647-50717745)
chr3 (113-212)||(50795103-50795201)
[»] chr5 (1 HSPs)
chr5 (181-217)||(11909949-11909985)


Alignment Details
Target: scaffold0003 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 41677 - 42127
Alignment:
Q  1 tcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgttttctgctgg 99  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| ||||||| |||    
T  41677 tcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttattttctgttgg 41776  T
Q  100 agcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  41777 agcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgctgct 41876  T
Q  200 tcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaa 299  Q
    ||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41877 tcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaa 41976  T
Q  300 acatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataacataac 396  Q
    |||||||||||| |||   ||||||||||||||||||||| |||||       | ||||||||||||||||||||||||||||| |||||||||||||||    
T  41977 acatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataac 42076  T
Q  397 aacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttc 445  Q
    |||||||||  |||  | |||||||| ||||||||||| ||| ||||||||    
T  42077 aacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttc 42127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 35007 - 35457
Alignment:
Q  1 tcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgttttctgctgg 99  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||   |  ||| ||||||| |||    
T  35007 tcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataccatctttattttctgttgg 35106  T
Q  100 agcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgct 199  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  35107 agcaaaatctgtatggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgctgct 35206  T
Q  200 tcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaa 299  Q
    ||||||||||||    ||||||||||||||||  |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35207 tcagagtgccctattactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaa 35306  T
Q  300 acatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataacataac 396  Q
    |||||||||||| |||   ||||||| ||||||||||||| |||||       | |||||||||||||||||||||| |||||| |||||||||||||||    
T  35307 acatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatataataaagtaatataacataac 35406  T
Q  397 aacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttc 445  Q
    |||||||||  |||  | |||||||| ||||||||||| ||| ||||||||    
T  35407 aacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttc 35457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 27445681 - 27445231
Alignment:
Q  1 tcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgttttctgctgg 99  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| ||||||| |||    
T  27445681 tcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttattttctgttgg 27445582  T
Q  100 agcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  27445581 agcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgctgct 27445482  T
Q  200 tcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaa 299  Q
    ||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27445481 tcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaa 27445382  T
Q  300 acatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataacataac 396  Q
    |||||||||||| |||   ||||||||||||||||||||| |||||       | ||||||||||||||||||||||||||||| |||||||||||||||    
T  27445381 acatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataac 27445282  T
Q  397 aacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttc 445  Q
    |||||||||  |||  | |||||||| ||||||||||| ||| ||||||||    
T  27445281 aacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttc 27445231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 20909316 - 20909632
Alignment:
Q  1 tcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgttttctgctgga 100  Q
    |||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  ||||||||||||    
T  20909316 tcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcattttctgctgga 20909415  T
Q  101 gcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgctt 200  Q
     ||||||||| ||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||||||||||||   |||  ||||||| ||||||    
T  20909416 acaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggctaattcctgctt 20909515  T
Q  201 cagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaa 300  Q
    |||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  20909516 cagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaa 20909614  T
Q  301 catgatatttttgaatca 318  Q
     ||||| |||| ||||||    
T  20909615 tatgatgttttggaatca 20909632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 20923764 - 20924080
Alignment:
Q  1 tcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgttttctgctgga 100  Q
    |||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  ||||||||||||    
T  20923764 tcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcattttctgctgga 20923863  T
Q  101 gcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgctt 200  Q
     ||||||||| ||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||||||||||||   |||  ||||||| ||||||    
T  20923864 acaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggctaattcctgctt 20923963  T
Q  201 cagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaa 300  Q
    |||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  20923964 cagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaa 20924062  T
Q  301 catgatatttttgaatca 318  Q
     ||||| |||| ||||||    
T  20924063 tatgatgttttggaatca 20924080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 42312430 - 42312746
Alignment:
Q  1 tcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgttttctgctgga 100  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||| |||||  ||||  |||| |||||| || ||||||   ||  ||||||||| ||    
T  42312430 tcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactactttagaaagctcattaatagaactaatatgattcttcattttctgctaga 42312529  T
Q  101 gcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgctt 200  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||   |||  ||||||| ||||||    
T  42312530 acaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtgtaggctaatttctgctt 42312629  T
Q  201 cagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaa 300  Q
    || ||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  42312630 catagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaa 42312728  T
Q  301 catgatatttttgaatca 318  Q
    | |||| |||| ||||||    
T  42312729 cgtgatgttttggaatca 42312746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 8333338 - 8333302
Alignment:
Q  181 atgttagctaattgctgcttcagagtgcccttcccct 217  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  8333338 atgttggctaattgctgcttcagagtgccctttccct 8333302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 15581194 - 15581230
Alignment:
Q  181 atgttagctaattgctgcttcagagtgcccttcccct 217  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  15581194 atgttagctaattgctgcttcagagtaccctttccct 15581230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 41326214 - 41326511
Alignment:
Q  1 tcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgttttctgctgga 100  Q
    |||||||||||||||| ||||||||| |||| ||||||| |||||| |||||| ||||  | || |||||| || ||||||   ||  ||||||||||||    
T  41326214 tcaagcttggatggatttcatttaaattcttccaaaaataaaaatactacttcagaaagcttattaatagaactaatatgattcttcattttctgctgga 41326313  T
Q  101 gcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgctt 200  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||   | |  |  |||| || |||    
T  41326314 acaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtatagggaaattcctactt 41326413  T
Q  201 cagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaa 299  Q
    |||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  41326414 cagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaa 41326511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47246982 - 47246912
Alignment:
Q  1 tcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaataga 71  Q
    |||||||||||||||| |||||||||| ||| ||||||| |||||| |||||| ||||  |||| ||||||    
T  47246982 tcaagcttggatggatttcatttaaagccttccaaaaataaaaatactacttcagaaagctcattaataga 47246912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 11504856 - 11504728
Alignment:
Q  189 taattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtg 288  Q
    |||||||||||| |||||||| || ||||||| ||||| | ||| |||||||||| || |||||||||||  |||||||||| |   |||||||||||||    
T  11504856 taattgctgctttagagtgccatttccctttt-aaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg 11504758  T
Q  289 cataggagcaaacatgatatttttgaatca 318  Q
    |||||||| |||||| || |||| ||||||    
T  11504757 cataggagtaaacataatgttttagaatca 11504728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 50717745 - 50717647
Alignment:
Q  113 tggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 212  Q
    ||||| ||||||||| ||||| ||||||||||||||  || | |||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50717745 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50717647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 50795103 - 50795201
Alignment:
Q  113 tggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 212  Q
    ||||| ||||||||| ||||| ||||||||||||||  || | |||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50795103 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50795201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 11909949 - 11909985
Alignment:
Q  181 atgttagctaattgctgcttcagagtgcccttcccct 217  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  11909949 atgttggctaattgctgcttcagagtgccctttccct 11909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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